Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   CV730_RS06285 Genome accession   NZ_CP024946
Coordinates   1303893..1305869 (-) Length   658 a.a.
NCBI ID   WP_145728789.1    Uniprot ID   -
Organism   Helicobacter pylori strain B147     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1298893..1310869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV730_RS06260 (CV730_06275) - 1298954..1299346 (+) 393 WP_000656174.1 4Fe-4S dicluster domain-containing protein -
  CV730_RS06265 (CV730_06280) - 1299356..1300579 (+) 1224 WP_145728783.1 2-oxoacid:ferredoxin oxidoreductase subunit alpha -
  CV730_RS06270 (CV730_06285) - 1300592..1301536 (+) 945 WP_097638704.1 thiamine pyrophosphate-dependent enzyme -
  CV730_RS06275 (CV730_06290) purB 1301649..1302971 (+) 1323 WP_145728785.1 adenylosuccinate lyase -
  CV730_RS06280 (CV730_06295) - 1303036..1303869 (+) 834 WP_145728787.1 outer membrane protein -
  CV730_RS06285 (CV730_06300) uvrB 1303893..1305869 (-) 1977 WP_145728789.1 excinuclease ABC subunit UvrB Machinery gene
  CV730_RS06290 (CV730_06305) - 1305920..1306523 (-) 604 Protein_1193 hypothetical protein -
  CV730_RS08235 - 1306528..1308231 (-) 1704 WP_227979668.1 DUF3519 domain-containing protein -
  CV730_RS08240 - 1308236..1309606 (-) 1371 WP_227979670.1 DUF3519 domain-containing protein -
  CV730_RS06300 (CV730_06315) - 1309575..1309775 (+) 201 WP_025461092.1 hypothetical protein -
  CV730_RS06305 (CV730_06320) - 1310024..1310794 (-) 771 WP_000540107.1 HP1117 family Sel1-like repeat protein -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 75953.44 Da        Isoelectric Point: 6.7808

>NTDB_id=215288 CV730_RS06285 WP_145728789.1 1303893..1305869(-) (uvrB) [Helicobacter pylori strain B147]
MPLFDLKSPYPPAGDQPQAIEALAKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLCAQLYSEFKAFF
PHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKI
KVGEKHAYKSFLLKLVEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV
MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTGKAPNET
PFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNK
LELELSKKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMHS
EIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGKVLLYAKKIT
QSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNL
DFEEAMRLRDEISKLRTL

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=215288 CV730_RS06285 WP_145728789.1 1303893..1305869(-) (uvrB) [Helicobacter pylori strain B147]
ATGCCTTTATTTGATTTAAAAAGCCCTTACCCACCAGCAGGCGATCAGCCCCAAGCTATAGAAGCTTTAGCAAAAAGCTT
GAAAAATAACAACCATTATCAAACTTTAGTGGGGGTTACAGGGAGCGGTAAGACTTACACGATGGCCAATATCATCGCTC
AAACCAATAAACCCGCTTTGATCATGAGCCATAATAAGACCTTATGCGCGCAGCTCTATAGCGAGTTTAAGGCGTTTTTC
CCGCATAATAGGGTGGAGTATTTTATCTCCCACTTTGATTACTACCAGCCTGAAAGCTATATCCCTAGGAGGGATTTATT
TATTGAAAAAGACAGCTCTATTAACGATGATTTAGAGCGTTTGAGATTGAGCGCGACCACCTCGCTTTTAGGTTATGATG
ATGTGATCGTGATAGCGAGCGTTTCGGCTAATTATGGTTTGGGTAACCCTGAAGAATATTTAAAAGTCATGGAAAAAATC
AAAGTGGGCGAGAAGCACGCTTACAAGAGCTTTTTACTAAAGCTAGTGGAAATGGGTTATAGCCGTAATGAAGTGGTGTT
TGATAGGGGGAGCTTTAGAGCGACGGGGGAATGCGTGGATATTTTCCCCGCTTATAATGACGCTGAATTTATTAGGATTG
AATTTTTTGGCGATGAGATAGAAAGGATTGCGGTCTTTGACGCTTTAGAAAGAAATGAAATCAAGCGCTTGGATTCTGTC
ATGCTTTATGCGGCCAGTCAGTTTGCCGTAGGGAGCGAGAGGTTGAATTTAGCCATTAAAAGCATTGAAGATGAACTCGC
TCTAAGATTGAAATTTTTTAAAGAGCAGGATAAAATGCTTGAATACAACCGCCTCAAACAACGCACCGAGCATGATTTAG
AAATGATTAGCGCGACCGGTGTGTGTAAGGGCATTGAAAATTACGCGCGCCATTTCACCGGTAAAGCCCCTAACGAAACG
CCTTTTTGCTTGTTTGATTATTTAGGGATTTTTGAGCGGGAGTTTTTAGTCATTGTAGATGAAAGCCATGTGAGTTTGCC
GCAGTTTGGGGGGATGTATGCAGGGGATATGAGCAGGAAAAGCGTTTTAGTGGAATATGGTTTTAGATTGCCTAGCGCTT
TAGACAACCGCCCTTTAAAATTTGATGAATTTATCCATAAAAATTGCCAATTCCTTTTTGTGTCCGCTACGCCCAATAAG
CTCGAATTAGAGCTTTCCAAAAAGAATGTTGCTGAGCAAATCATTCGCCCTACAGGGCTTTTAGACCCTAAATTTGAAGT
GCGAGACAGCGATAAGCAAGTTCAGGATTTATTTGATGAAATCAAGTTAGTGGTGGCCAGAGATGAAAGGGTGCTCATCA
CCACGCTCACTAAAAAAATGGCAGAAGAATTGTGTAAATATTATGCTGAATGGGGCTTGAAGGTGCGTTACATGCATAGT
GAAATTGATGCGATTGAAAGAAATCACATCATCCGCTCTTTAAGGCTTAAGGAATTTGATGTTTTAATAGGGATCAATCT
TTTAAGAGAGGGGCTGGATTTGCCTGAAGTTTCTTTAGTAGCGATCATGGATGCAGATAAAGAAGGGTTTTTAAGGAGCG
AAACAAGCCTCATTCAAACCATGGGGCGAGCCGCTAGAAACGCTAATGGCAAGGTTTTATTATACGCTAAAAAGATCACT
CAAAGCATGCAAAAAGCCTTTGAGATCACGAGTTACAGGCGCGCCAAGCAAGAAGAATTCAATAAAATCCATAACATCAC
CCCTAAAACCGTTACTCGTGCTTTAGAAGAGGAATTGAAATTAAGAGACGATGAGATTAGAATCGCTAAAGCCTTAAAAA
AGGACAAAATGCCTAAAAGTGAAAGGGAAAAAATCATTAAAGAATTAGATAAAAAAATGCGAGAATGCGCGAAAAATTTG
GATTTTGAAGAAGCGATGCGTTTGAGAGACGAAATCTCTAAATTAAGAACGCTTTAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(159-248)

Ultra-violet resistance protein B (UvrB)

(554-595)

UvrB/uvrC motif (UVR)

(623-657)

Helicase conserved C-terminal domain (Helicase_C)

(445-547)

Type III restriction enzyme, res subunit (ResIII)

(15-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

49.774

100

0.502
  uvrB Streptococcus pneumoniae D39

49.774

100

0.502
  uvrB Streptococcus pneumoniae TIGR4

49.774

100

0.502