Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PspS34_RS24000 Genome accession   NZ_CP019398
Coordinates   5368739..5370076 (+) Length   445 a.a.
NCBI ID   WP_154862178.1    Uniprot ID   -
Organism   Pseudomonas sp. S34     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5363739..5375076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspS34_RS23975 (PspS34_24375) pgeF 5365182..5365901 (-) 720 WP_150813477.1 peptidoglycan editing factor PgeF -
  PspS34_RS23980 (PspS34_24380) rluD 5365898..5366860 (-) 963 WP_008052092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PspS34_RS23985 (PspS34_24385) - 5367012..5368034 (+) 1023 WP_150813478.1 outer membrane protein assembly factor BamD -
  PspS34_RS23990 (PspS34_24390) - 5368160..5368393 (+) 234 WP_057713250.1 PP0621 family protein -
  PspS34_RS23995 (PspS34_24395) - 5368440..5368742 (+) 303 Protein_4765 hypothetical protein -
  PspS34_RS24000 (PspS34_24400) pilR 5368739..5370076 (+) 1338 WP_154862178.1 sigma-54 dependent transcriptional regulator Regulator
  PspS34_RS24005 (PspS34_24405) thiO 5370206..5371306 (-) 1101 WP_090451471.1 glycine oxidase ThiO -
  PspS34_RS24010 (PspS34_24410) - 5371363..5371764 (-) 402 WP_150813481.1 type IV pilin protein -
  PspS34_RS24015 (PspS34_24415) - 5371779..5372192 (-) 414 WP_154862177.1 hypothetical protein -
  PspS34_RS24020 (PspS34_24420) - 5372179..5372658 (-) 480 WP_150813483.1 PilX N-terminal domain-containing pilus assembly protein -
  PspS34_RS24025 (PspS34_24425) - 5372669..5373376 (-) 708 WP_154862176.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PspS34_RS24030 (PspS34_24430) pilV 5373373..5373822 (-) 450 WP_159390341.1 type IV pilus modification protein PilV -
  PspS34_RS24035 (PspS34_24435) - 5373819..5374292 (-) 474 WP_154862174.1 GspH/FimT family protein -
  PspS34_RS24040 (PspS34_24440) - 5374423..5374962 (+) 540 WP_154862173.1 GspH/FimT family pseudopilin -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49863.26 Da        Isoelectric Point: 7.0950

>NTDB_id=215190 PspS34_RS24000 WP_154862178.1 5368739..5370076(+) (pilR) [Pseudomonas sp. S34]
MNTKPRQKVLIVDDEPDIRELLEITLGRMKLETFNARNVGEAQSLLKRETFDLCLTDMQLPDGTGLELVQHIQQRHPRVQ
VAMITAYDSLENAINVLKAGAFDFLTKPVDLTRLRELVTSALLVPARGVGIDRRLLGDSLPMRNLREHITKLAGSHATVY
ISGESGSGKELVARLIHDQSPRANQPFIAINCAAIPSELLESEFFGHRKGSFSGAIEDKPGLFQTAHGGTLLLDEVADLP
LSMQVKLLRAIQEKSVRCVGGQQEVAVDVRILCATHKDLGAEVAAGRFRHDLYYRLNVIELRVPPLRERRDDIEMLASHI
LKRLAADTGQPAARLHPQALDALKSYRFPGNVRELENMLERAHTLCENKQIEAGDLRLAEGNYGAEGGVPDLTRIDNLEA
YLENIERQLLLQALEETRWNRTAAAQRLNLSFRSMRYRLKKFGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=215190 PspS34_RS24000 WP_154862178.1 5368739..5370076(+) (pilR) [Pseudomonas sp. S34]
TTGAACACCAAACCACGACAAAAAGTCTTGATTGTCGATGACGAACCGGACATTCGCGAACTCCTGGAAATCACCCTGGG
AAGGATGAAGCTGGAGACGTTCAACGCCCGCAACGTCGGCGAAGCGCAATCCCTGCTCAAACGCGAAACCTTCGATCTAT
GCCTGACCGACATGCAGTTGCCGGACGGTACCGGCCTGGAGCTGGTGCAGCACATCCAGCAACGCCACCCCCGGGTCCAG
GTGGCGATGATCACCGCCTATGACAGTCTCGAAAACGCGATCAATGTGCTCAAGGCCGGGGCATTCGACTTCCTGACCAA
ACCGGTGGACCTTACGCGTCTGCGTGAGCTGGTCACCAGCGCCCTGCTGGTTCCTGCCCGCGGGGTCGGCATCGATCGTC
GCTTGCTGGGCGACTCATTGCCCATGCGCAACCTGCGCGAACACATCACCAAACTGGCCGGCAGCCATGCGACGGTATAC
ATCAGCGGAGAGTCCGGCAGCGGCAAGGAGTTGGTCGCGCGCCTGATCCACGATCAAAGCCCTCGCGCCAATCAGCCGTT
CATTGCGATCAACTGCGCGGCGATTCCCTCGGAACTGTTGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCG
GCGCCATCGAAGACAAGCCCGGCCTGTTCCAGACAGCCCACGGCGGCACCCTGCTGCTCGATGAAGTCGCCGACCTGCCG
CTGTCCATGCAAGTCAAATTGCTGCGCGCGATTCAGGAGAAATCCGTACGCTGCGTCGGCGGGCAGCAGGAAGTGGCGGT
GGATGTGCGCATTCTCTGCGCCACGCACAAGGACCTTGGCGCCGAAGTCGCCGCCGGACGATTTCGTCATGATCTTTACT
ACCGTTTGAACGTGATCGAACTCCGGGTGCCGCCCTTGCGCGAGCGCCGTGATGACATCGAAATGCTAGCCAGCCACATT
CTCAAGCGTCTGGCCGCCGATACCGGTCAACCTGCGGCGAGACTCCACCCCCAAGCCCTCGATGCGCTGAAGAGCTATCG
CTTCCCGGGCAATGTGCGGGAACTGGAAAACATGCTCGAACGGGCGCACACCTTATGTGAGAACAAACAGATCGAAGCCG
GCGACCTGCGCCTGGCTGAAGGCAACTATGGGGCTGAGGGTGGCGTGCCGGACCTGACCCGGATCGACAATCTGGAAGCC
TACCTGGAAAACATCGAACGCCAACTACTGCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCTCAGCG
GTTGAACCTGTCATTCAGGTCGATGCGCTATAGGCTCAAGAAGTTTGGATTGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

75.169

99.551

0.748
  pilR Acinetobacter baumannii strain A118

48.261

100

0.499

Multiple sequence alignment