Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   BST96_RS01560 Genome accession   NZ_CP019343
Coordinates   347654..347941 (-) Length   95 a.a.
NCBI ID   WP_085756995.1    Uniprot ID   A0A1X9N6X1
Organism   Oceanicoccus sagamiensis strain NBRC 107125     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342654..352941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BST96_RS01545 (BST96_01545) - 344286..344468 (-) 183 WP_085756992.1 hypothetical protein -
  BST96_RS01550 (BST96_01550) - 344723..346501 (-) 1779 WP_085756993.1 SLC13 family permease -
  BST96_RS01555 (BST96_01555) - 346541..347503 (-) 963 WP_085756994.1 DHH family phosphoesterase -
  BST96_RS01560 (BST96_01560) comEA 347654..347941 (-) 288 WP_085756995.1 ComEA family DNA-binding protein Machinery gene
  BST96_RS01565 (BST96_01565) pyrF 348050..348745 (-) 696 WP_085756996.1 orotidine-5'-phosphate decarboxylase -
  BST96_RS01570 (BST96_01570) lapB 348790..349983 (-) 1194 WP_085756997.1 lipopolysaccharide assembly protein LapB -
  BST96_RS01575 (BST96_01575) - 349986..350321 (-) 336 WP_085756998.1 LapA family protein -
  BST96_RS01580 (BST96_01580) ihfB 350533..350826 (-) 294 WP_085756999.1 integration host factor subunit beta -
  BST96_RS01585 (BST96_01585) rpsA 350973..352649 (-) 1677 WP_085757000.1 30S ribosomal protein S1 -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10179.79 Da        Isoelectric Point: 6.3009

>NTDB_id=214946 BST96_RS01560 WP_085756995.1 347654..347941(-) (comEA) [Oceanicoccus sagamiensis strain NBRC 107125]
MRIFRTIFLSLSLALSGLVLPSLAFSAEPNLPVNINTADAETLSAALKGVGTRKAEAIIAYRESYGPFKALEELTAVKGI
GESLLNKNRDSITLE

Nucleotide


Download         Length: 288 bp        

>NTDB_id=214946 BST96_RS01560 WP_085756995.1 347654..347941(-) (comEA) [Oceanicoccus sagamiensis strain NBRC 107125]
ATGCGTATATTCCGTACTATTTTTTTATCCCTGTCATTAGCACTTTCTGGTTTGGTACTGCCTTCTTTGGCGTTTAGTGC
AGAGCCGAACCTCCCCGTTAATATCAATACCGCCGATGCTGAAACTTTGTCAGCAGCGCTTAAAGGTGTAGGTACTCGCA
AAGCGGAGGCCATTATTGCTTACCGCGAAAGCTACGGGCCTTTTAAGGCACTGGAAGAGTTGACAGCAGTCAAAGGCATT
GGTGAATCTTTGCTCAACAAAAACCGGGACTCTATTACTCTGGAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X9N6X1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

47

100

0.495
  comEA Vibrio cholerae strain A1552

47

100

0.495
  comEA/comE1 Glaesserella parasuis strain SC1401

45.57

83.158

0.379

Multiple sequence alignment