Detailed information NTG0214844

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BWZ32_RS15660
• Genome accession: NZ_CP019320
• Coordinates: 3123149..3124141 (-)
• Length: 330 a.a.
• NCBI ID: WP_011079521.1
• Uniprot ID: A0A3Q0L3U7
• Organism: Vibrio vulnificus strain VV2014DJH
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3118149..3129141

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BWZ32_RS15640 (BWZ32_15525)	recX	3118177..3118638 (-)	462	WP_101957326.1	recombination regulator RecX	-
BWZ32_RS15645 (BWZ32_15530)	recA	3118742..3119791 (-)	1050	WP_026130625.1	recombinase RecA	Machinery gene
BWZ32_RS15650 (BWZ32_15535)	pncC	3119925..3120428 (-)	504	WP_013571128.1	nicotinamide-nucleotide amidase	-
BWZ32_RS15655 (BWZ32_15540)	mutS	3120512..3123073 (+)	2562	WP_101957327.1	DNA mismatch repair protein MutS	-
BWZ32_RS15660 (BWZ32_15545)	rpoS	3123149..3124141 (-)	993	WP_011079521.1	RNA polymerase sigma factor RpoS	Regulator
BWZ32_RS15665 (BWZ32_15550)	-	3124222..3125118 (-)	897	WP_101957328.1	peptidoglycan DD-metalloendopeptidase family protein	-
BWZ32_RS15670 (BWZ32_15555)	-	3125162..3125788 (-)	627	WP_011079519.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BWZ32_RS15675 (BWZ32_15560)	surE	3125791..3126558 (-)	768	WP_039554647.1	5'/3'-nucleotidase SurE	-
BWZ32_RS15680 (BWZ32_15565)	truD	3126564..3127607 (-)	1044	WP_011079517.1	tRNA pseudouridine(13) synthase TruD	-
BWZ32_RS15685 (BWZ32_15570)	ispF	3127643..3128119 (-)	477	WP_011151152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BWZ32_RS15690 (BWZ32_15575)	ispD	3128116..3128829 (-)	714	WP_039554651.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BWZ32_RS15695 (BWZ32_15580)	ftsB	3128829..3129110 (-)	282	WP_011079514.1	cell division protein FtsB	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38054.13 Da
• Isoelectric Point: 4.5114

>NTDB_id=214844 BWZ32_RS15660 WP_011079521.1 3123149..3124141(-) (rpoS) [Vibrio vulnificus strain VV2014DJH]
MSISNTVTKVKDFDVNQMDDDFNDDIEINEKEDLTEEKVKLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=214844 BWZ32_RS15660 WP_011079521.1 3123149..3124141(-) (rpoS) [Vibrio vulnificus strain VV2014DJH]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATTTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATTAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCAAACTTCGCGAGGAGTTTGATGCCAGCAACAAGAGCTTAGACG
CGACACAGCTTTATCTAGGAGAAATTGGTTTTTCTCCACTATTAACCGCAGAAGAAGAAGTTCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCCGCACGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTTGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGCGCGGTAGAGAAATTCGATCCAG
AGCGTGGTTTCCGCTTCTCGACTTACGCAACATGGTGGATTCGCCAAACCATCGAACGTGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTACGTACGGCGCGTGAGCTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGATATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGCATTAGCTCTGTCGATACGCCGATTGGTGGAGATGGAGAGAAGGCGTTATTGGATATTATTCCGGATGCAAACAAC
TCTGACCCAGAAGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGCTATGAGCCTTCAACACTGGAAGAGGTTGGACAAGAGATTGGTT
TAACTCGTGAGCGAGTGCGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAACTTGTTTGATATCGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70 region 2 (Sigma70_r2) (91-160)

3D structure

• AlphaFold DB: A0A3Q0L3U7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.899	100	0.836