Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CU076_RS23225 Genome accession   NZ_CP024830
Coordinates   4508730..4509467 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain CREC-532     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4503730..4514467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU076_RS23210 (CU076_23215) clpC 4504184..4506757 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  CU076_RS23215 (CU076_23220) yfiH 4506887..4507618 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  CU076_RS23220 (CU076_23225) rluD 4507615..4508595 (-) 981 WP_000079099.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CU076_RS23225 (CU076_23230) comL 4508730..4509467 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CU076_RS23235 (CU076_23240) raiA 4509738..4510079 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CU076_RS27560 pheL 4510183..4510230 (+) 48 WP_010723158.1 phe operon leader peptide -
  CU076_RS23240 (CU076_23245) pheA 4510329..4511489 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  CU076_RS23245 (CU076_23250) tyrA 4511532..4512653 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CU076_RS23250 (CU076_23255) aroF 4512664..4513734 (-) 1071 WP_100183825.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CU076_RS23255 (CU076_23260) yfiL 4513944..4514309 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=214664 CU076_RS23225 WP_000197686.1 4508730..4509467(+) (comL) [Escherichia coli strain CREC-532]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=214664 CU076_RS23225 WP_000197686.1 4508730..4509467(+) (comL) [Escherichia coli strain CREC-532]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376