Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   BWP24_RS20150 Genome accession   NZ_CP019294
Coordinates   822123..823424 (-) Length   433 a.a.
NCBI ID   WP_283166056.1    Uniprot ID   -
Organism   Vibrio campbellii strain LMB29     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 817123..828424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWP24_RS20135 (BWP24_20175) - 818427..818975 (+) 549 WP_077201618.1 GNAT family N-acetyltransferase -
  BWP24_RS20140 (BWP24_20180) - 819050..819667 (-) 618 WP_050914172.1 HAD family phosphatase -
  BWP24_RS20145 (BWP24_20185) cqsS 819971..822016 (+) 2046 WP_045369090.1 response regulator Regulator
  BWP24_RS20150 (BWP24_20190) cqsA 822123..823424 (-) 1302 WP_283166056.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  BWP24_RS20155 (BWP24_20195) ylqF 823714..824658 (-) 945 WP_005426767.1 ribosome biogenesis GTPase YlqF -
  BWP24_RS20160 (BWP24_20200) - 824979..825965 (-) 987 WP_077201620.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 48880.79 Da        Isoelectric Point: 6.4998

>NTDB_id=214663 BWP24_RS20150 WP_283166056.1 822123..823424(-) (cqsA) [Vibrio campbellii strain LMB29]
MRSLQAHANLCNLTNDTELILVKLYNCQRWRFPVLRRELIMSDKPKTKPLPSFVEERLDFYIQDLIEQNENQKHLVLGKR
PQQGAVVMQSNDYLSLSHNLQIQQAHRDAIYEHDDNVVMSAIFLQDDNSKPAFETQLADYVGMGSCLLSQSGWAANIGLL
QTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMNHLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFD
CALVVDESHSLGTHGPNGSGLVKALELTDQVDFITVSLAKTFAYRAGAILGPEKLARTLPFVAFPAIFSSTVLPQEIVRL
EKTLEVIRSADDKRTMLFNRAKELRTGLKQIGFHIRSESQIVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNI
IRFSINADMTSRDIDHVLTACQEAYNHPELEFA

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=214663 BWP24_RS20150 WP_283166056.1 822123..823424(-) (cqsA) [Vibrio campbellii strain LMB29]
ATGCGGAGTTTGCAGGCGCACGCAAACTTATGCAACTTGACTAATGACACCGAGCTCATATTGGTCAAACTATATAACTG
TCAGCGCTGGCGTTTTCCTGTGTTACGAAGAGAACTTATTATGAGTGATAAACCGAAAACAAAACCACTTCCTTCCTTTG
TTGAGGAACGCCTAGACTTTTATATTCAAGATCTGATTGAGCAGAACGAAAACCAAAAGCACTTGGTATTAGGGAAGCGA
CCACAACAAGGAGCGGTGGTCATGCAAAGTAACGACTACTTGTCGTTGTCCCACAATCTACAAATTCAGCAGGCACATCG
TGATGCTATCTACGAGCACGATGATAACGTTGTCATGTCTGCGATTTTCTTACAAGATGACAACTCAAAACCTGCATTTG
AAACGCAGCTCGCGGATTATGTCGGTATGGGCAGTTGCCTATTATCCCAGTCCGGATGGGCAGCCAATATTGGCTTGTTA
CAAACGATTTGTCCGCCAGAAACACCGGTCTATATCGACTTCTTTGCACACATGTCTTTGTGGGAAGGTATTCGAGCGGC
AGGAGCGCAAGCGCATCCATTCATGCATAACAACATGAACCATTTGCGCAAGCAGATACAGCGTCACGGCTCTGGCGTTA
TCGTTGTGGATTCGGTCTATAGCACGATAGGTACGATCGCCCCACTCCACGACATCTACGAAATGGCGCGTGAGTTTGAT
TGTGCTTTGGTGGTCGATGAGTCCCACTCATTAGGCACGCATGGGCCAAATGGTTCTGGCTTAGTGAAAGCATTAGAACT
CACTGATCAAGTGGATTTCATTACGGTGAGTTTGGCAAAAACATTTGCTTATCGGGCTGGGGCGATTCTTGGTCCAGAAA
AGTTGGCTAGAACGCTACCCTTTGTCGCATTCCCAGCCATCTTTAGTTCGACGGTCCTGCCACAAGAGATCGTTCGACTT
GAAAAGACTCTCGAAGTCATTAGAAGCGCAGATGATAAGCGAACCATGCTGTTCAATCGCGCCAAGGAGCTCAGAACAGG
CCTAAAGCAGATTGGCTTTCATATCCGCAGCGAATCGCAAATTGTGGCGTTAGAATGCGGTAGTGAGCGAAATACGGAAC
GAGTACGTGACTTCTTAGAAGAACGAAACGTGTTTGGCGCTGTATTCTGTCGTCCTGCAACGGGCAAGAATAAGAACATT
ATTCGATTTTCGATCAATGCTGATATGACATCTCGTGACATTGACCATGTCTTGACGGCTTGTCAGGAAGCGTATAACCA
CCCAGAACTAGAATTCGCCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(87-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.179

90.069

0.515

Multiple sequence alignment