Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | FORC53_RS01635 | Genome accession | NZ_CP019290 |
| Coordinates | 332239..332829 (+) | Length | 196 a.a. |
| NCBI ID | WP_011079353.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus strain FORC_053 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 327239..337829
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC53_RS01620 (FORC53_0290) | oxyR | 327623..328522 (+) | 900 | WP_011079350.1 | DNA-binding transcriptional regulator OxyR | - |
| FORC53_RS01625 (FORC53_0291) | - | 328589..331102 (-) | 2514 | WP_118893221.1 | penicillin-binding protein 1A | - |
| FORC53_RS01630 (FORC53_0292) | pilM | 331242..332249 (+) | 1008 | WP_017419656.1 | type IV pilus assembly protein PilM | Machinery gene |
| FORC53_RS01635 (FORC53_0293) | pilN | 332239..332829 (+) | 591 | WP_011079353.1 | PilN domain-containing protein | Machinery gene |
| FORC53_RS01640 (FORC53_0294) | pilO | 332822..333412 (+) | 591 | WP_011079354.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| FORC53_RS01645 (FORC53_0295) | pilP | 333402..333914 (+) | 513 | WP_011079355.1 | pilus assembly protein PilP | Machinery gene |
| FORC53_RS01650 (FORC53_0296) | pilQ | 333928..335712 (+) | 1785 | WP_011079356.1 | type IV pilus secretin PilQ | Machinery gene |
| FORC53_RS01655 (FORC53_0297) | aroK | 335914..336432 (+) | 519 | WP_011079357.1 | shikimate kinase AroK | - |
| FORC53_RS01660 (FORC53_0298) | aroB | 336465..337556 (+) | 1092 | WP_011079358.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22672.91 Da Isoelectric Point: 7.6441
>NTDB_id=214575 FORC53_RS01635 WP_011079353.1 332239..332829(+) (pilN) [Vibrio vulnificus strain FORC_053]
MQHKINLLPWREHKREEHKRRFVSLVALGALIAVGIQWGIGQYFSYQQRLQQERLDYLTHYIAQLDQRIQAMNIAKEEHS
QILARLKVVESLQAERNKTTAFMNLMTELIPEGVYVDKIKMNTNDVELAGISDSTARLATMLDNLERSTFLKEVEMHSIV
HDKKRFGKSFQTFTVSFVFDEHADSANTLAKEGNHG
MQHKINLLPWREHKREEHKRRFVSLVALGALIAVGIQWGIGQYFSYQQRLQQERLDYLTHYIAQLDQRIQAMNIAKEEHS
QILARLKVVESLQAERNKTTAFMNLMTELIPEGVYVDKIKMNTNDVELAGISDSTARLATMLDNLERSTFLKEVEMHSIV
HDKKRFGKSFQTFTVSFVFDEHADSANTLAKEGNHG
Nucleotide
Download Length: 591 bp
>NTDB_id=214575 FORC53_RS01635 WP_011079353.1 332239..332829(+) (pilN) [Vibrio vulnificus strain FORC_053]
ATGCAGCATAAGATCAACCTGTTACCTTGGCGTGAACACAAGCGTGAGGAGCATAAACGTCGTTTTGTCAGTCTGGTCGC
ATTAGGTGCCCTGATCGCGGTCGGTATTCAGTGGGGCATTGGCCAGTACTTTTCATACCAACAACGTTTGCAGCAAGAGC
GTCTCGATTATCTTACCCACTATATCGCACAGTTGGATCAGCGTATCCAAGCGATGAACATTGCCAAGGAAGAGCATAGC
CAGATCCTCGCTCGACTCAAGGTTGTCGAGTCGCTTCAAGCGGAACGCAACAAAACCACCGCATTTATGAACTTGATGAC
GGAACTGATCCCTGAGGGGGTGTATGTCGACAAGATCAAAATGAACACCAACGACGTTGAGTTGGCTGGCATAAGCGATA
GTACCGCTCGACTCGCCACCATGTTGGATAATTTGGAACGTTCCACCTTTCTAAAAGAAGTGGAAATGCATTCGATTGTT
CATGACAAGAAGCGTTTTGGTAAGAGCTTCCAGACGTTTACCGTCTCTTTTGTATTTGATGAACATGCCGATTCTGCCAA
TACGTTGGCCAAGGAGGGGAATCATGGCTAG
ATGCAGCATAAGATCAACCTGTTACCTTGGCGTGAACACAAGCGTGAGGAGCATAAACGTCGTTTTGTCAGTCTGGTCGC
ATTAGGTGCCCTGATCGCGGTCGGTATTCAGTGGGGCATTGGCCAGTACTTTTCATACCAACAACGTTTGCAGCAAGAGC
GTCTCGATTATCTTACCCACTATATCGCACAGTTGGATCAGCGTATCCAAGCGATGAACATTGCCAAGGAAGAGCATAGC
CAGATCCTCGCTCGACTCAAGGTTGTCGAGTCGCTTCAAGCGGAACGCAACAAAACCACCGCATTTATGAACTTGATGAC
GGAACTGATCCCTGAGGGGGTGTATGTCGACAAGATCAAAATGAACACCAACGACGTTGAGTTGGCTGGCATAAGCGATA
GTACCGCTCGACTCGCCACCATGTTGGATAATTTGGAACGTTCCACCTTTCTAAAAGAAGTGGAAATGCATTCGATTGTT
CATGACAAGAAGCGTTTTGGTAAGAGCTTCCAGACGTTTACCGTCTCTTTTGTATTTGATGAACATGCCGATTCTGCCAA
TACGTTGGCCAAGGAGGGGAATCATGGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
67.956 |
92.347 |
0.628 |
| pilN | Vibrio cholerae strain A1552 |
63.277 |
90.306 |
0.571 |