Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SEERU717_RS14235 Genome accession   NZ_CP019192
Coordinates   2778227..2778832 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Rubislaw str. ATCC 10717     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2773227..2783832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEERU717_RS14220 (SEERU717_14235) helD 2773444..2775498 (-) 2055 WP_023207980.1 DNA helicase IV -
  SEERU717_RS14225 (SEERU717_14240) - 2775622..2776068 (+) 447 WP_001261222.1 YccF domain-containing protein -
  SEERU717_RS14230 (SEERU717_14245) yccS 2776087..2778240 (+) 2154 WP_000950879.1 YccS family putative transporter -
  SEERU717_RS14235 (SEERU717_14250) sxy/tfoX 2778227..2778832 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  SEERU717_RS14240 (SEERU717_14255) sulA 2779049..2779558 (+) 510 WP_023207981.1 SOS-induced cell division inhibitor SulA -
  SEERU717_RS14245 (SEERU717_14260) ompA 2779915..2780967 (+) 1053 WP_001562588.1 porin OmpA -
  SEERU717_RS14250 (SEERU717_14265) matP 2781039..2781491 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  SEERU717_RS14255 (SEERU717_14270) - 2781677..2783437 (+) 1761 WP_000156458.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=213912 SEERU717_RS14235 WP_001202375.1 2778227..2778832(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Rubislaw str. ATCC 10717]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=213912 SEERU717_RS14235 WP_001202375.1 2778227..2778832(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Rubislaw str. ATCC 10717]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment