Detailed information NTG0213631

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AO536_RS26425
• Genome accession: NZ_CP019171
• Coordinates: 5826920..5827804 (+)
• Length: 294 a.a.
• NCBI ID: WP_012207288.1
• Uniprot ID: -
• Organism: MAG: Delftia acidovorans isolate ANG1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5821920..5832804

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AO536_RS26395	rpmA	5821937..5822194 (-)	258	WP_012207283.1	50S ribosomal protein L27	-
AO536_RS26400	rplU	5822210..5822521 (-)	312	WP_012207284.1	50S ribosomal protein L21	-
AO536_RS26405	-	5822752..5823681 (+)	930	WP_034396917.1	polyprenyl synthetase family protein	-
AO536_RS26415	pilB	5823922..5825664 (+)	1743	WP_012207286.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AO536_RS26420	pilC	5825703..5826920 (+)	1218	WP_012207287.1	type II secretion system F family protein	Machinery gene
AO536_RS26425	pilD	5826920..5827804 (+)	885	WP_012207288.1	A24 family peptidase	Machinery gene
AO536_RS26430	coaE	5827819..5828463 (+)	645	WP_012207289.1	dephospho-CoA kinase	-
AO536_RS26435	zapD	5828553..5829308 (+)	756	WP_012207290.1	cell division protein ZapD	-
AO536_RS26440	-	5829326..5829562 (+)	237	WP_085930583.1	DNA gyrase inhibitor YacG	-
AO536_RS26445	-	5829573..5830091 (-)	519	WP_012207292.1	NUDIX domain-containing protein	-
AO536_RS26450	-	5830142..5831098 (-)	957	WP_012207293.1	ATP-binding protein	-
AO536_RS26455	argJ	5831264..5832496 (-)	1233	WP_012207294.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 294 a.a.
• Molecular weight: 31719.27 Da
• Isoelectric Point: 6.6134

>NTDB_id=213631 AO536_RS26425 WP_012207288.1 5826920..5827804(+) (pilD) [MAG: Delftia acidovorans isolate ANG1]
MVLELWMQATLGGLLGLLVGSFLNVVVHRLPRMMEQQWNAECAQWAQEQSGATPPSAAPDPAEPPLSLSRPRSRCPHCGH
AIHWYENIPVLSYLALRGRCSECKASISIRYPLVELACAALFAYCTMQWGITPTGAAWCLFSAALLSLALIDWDTTLLPD
DITLPLLWAGLLSSALHWTAVTLADAVWGAAVGYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWQALVPIILIS
SVIGAVVGIALKINSRLREGGYVPFGPFLAGAGFAAMVFGPQQMLQSLLAAIGL

Nucleotide

• Length: 885 bp

>NTDB_id=213631 AO536_RS26425 WP_012207288.1 5826920..5827804(+) (pilD) [MAG: Delftia acidovorans isolate ANG1]
ATGGTTTTGGAACTCTGGATGCAGGCTACATTGGGCGGCCTGCTGGGCCTGTTGGTTGGCAGCTTTCTCAACGTGGTGGT
GCATAGGCTGCCCCGCATGATGGAACAGCAATGGAATGCGGAATGCGCCCAATGGGCGCAGGAGCAATCCGGTGCCACGC
CCCCCTCTGCTGCGCCTGACCCTGCCGAGCCTCCCCTGAGCCTGAGCCGCCCCCGCTCGCGCTGCCCGCATTGCGGCCAT
GCCATCCACTGGTACGAGAACATTCCCGTGCTCAGCTATCTGGCGCTGCGGGGCCGGTGCTCGGAATGCAAGGCATCGAT
CAGCATCCGCTACCCGCTGGTGGAACTGGCCTGCGCTGCGCTATTCGCCTACTGCACGATGCAATGGGGCATCACGCCCA
CAGGCGCTGCCTGGTGCCTTTTCAGCGCCGCCTTGCTGAGCCTGGCATTGATCGACTGGGATACCACACTGCTCCCAGAC
GACATCACCCTGCCCTTGCTGTGGGCCGGACTGCTGTCGTCGGCGCTGCACTGGACCGCCGTGACTCTGGCCGACGCGGT
CTGGGGTGCCGCAGTGGGCTATCTTTCGCTGTGGCTGGTTTACTGGGCCTTCAAGCTGGCCACCGGCAAGGAAGGCATGG
GCTACGGCGACTTCAAGCTGTTTGCCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCACTCGTGCCCATCATCCTGATCTCG
TCCGTGATTGGCGCCGTCGTGGGCATTGCGCTGAAGATCAACAGCCGCCTGCGCGAAGGTGGCTATGTTCCCTTTGGCCC
CTTTCTTGCGGGCGCCGGCTTTGCCGCCATGGTGTTCGGACCCCAGCAGATGCTGCAATCCCTGTTGGCAGCCATCGGTC
TTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-128)

• Type IV leader peptidase family (Peptidase_A24) (140-249)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.429	95.238	0.49
pilD	Vibrio campbellii strain DS40M4	46.763	94.558	0.442
pilD	Acinetobacter nosocomialis M2	44.485	92.517	0.412
pilD	Acinetobacter baumannii D1279779	44.118	92.517	0.408
pilD	Neisseria gonorrhoeae MS11	45.627	89.456	0.408