Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   CS387_RS05220 Genome accession   NZ_CP024601
Coordinates   1121674..1123710 (-) Length   678 a.a.
NCBI ID   WP_097627011.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain KCOM 2799     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1116674..1128710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS387_RS05210 (CS387_05185) rseP 1118361..1119680 (-) 1320 WP_097627009.1 RIP metalloprotease RseP -
  CS387_RS12485 - 1119811..1119927 (-) 117 WP_130266925.1 DUF1661 domain-containing protein -
  CS387_RS11480 - 1119872..1120009 (+) 138 WP_353308683.1 DUF1661 domain-containing protein -
  CS387_RS05215 (CS387_05190) - 1120157..1121677 (+) 1521 WP_053444405.1 potassium/proton antiporter -
  CS387_RS05220 (CS387_05195) uvrB 1121674..1123710 (-) 2037 WP_097627011.1 excinuclease ABC subunit UvrB Machinery gene
  CS387_RS05225 (CS387_05200) tsf 1124063..1124887 (-) 825 WP_005873789.1 translation elongation factor Ts -
  CS387_RS05230 (CS387_05205) rpsB 1125026..1125871 (-) 846 WP_088443417.1 30S ribosomal protein S2 -
  CS387_RS05235 (CS387_05210) rpsI 1126006..1126392 (-) 387 WP_004584903.1 30S ribosomal protein S9 -
  CS387_RS05240 (CS387_05215) rplM 1126402..1126857 (-) 456 WP_005873830.1 50S ribosomal protein L13 -
  CS387_RS12070 - 1127417..1127770 (-) 354 WP_232517597.1 hypothetical protein -
  CS387_RS12075 - 1127739..1128092 (-) 354 WP_232517598.1 hypothetical protein -

Sequence

Protein


Download         Length: 678 a.a.        Molecular weight: 76490.85 Da        Isoelectric Point: 4.8387

>NTDB_id=213501 CS387_RS05220 WP_097627011.1 1121674..1123710(-) (uvrB) [Porphyromonas gingivalis strain KCOM 2799]
MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLSHNKTLAAQLYGEFKAFFP
ENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISL
HTGQRADRDHFIRLLVESYYTNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS
ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELGYCSGIENYSRYFDGRDTG
ERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADY
ELNRSEGVIVEQLIRPTGLLDPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD
VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAARHIHGRVIFYADKITD
SMQLTMDETARRRAKQLAYNEVHGITPQQIVKNSAAIWGEGDVSALQSGTESGAYIEESSMVAADPLADYLSKPKLEALI
ASTKKQMLAAAKELDFLEAARLRDEAARLEKKLEQLTA

Nucleotide


Download         Length: 2037 bp        

>NTDB_id=213501 CS387_RS05220 WP_097627011.1 1121674..1123710(-) (uvrB) [Porphyromonas gingivalis strain KCOM 2799]
ATGGACTACAAACTCACTTCTCGATTCAAGCCCACGGGCGACCAGCCGGAAGCCATTCGCCAACTCGTACAGGGTATCAA
CGAAGGGATGCCGGCTCAGACGCTGCTCGGCGTAACGGGTTCGGGCAAAACCTTTACGGTGGCTAACGTGGTGGCGGCGG
TCAATCGTCCGACCCTTGTCCTGAGTCACAACAAGACCTTGGCGGCACAGCTATACGGAGAGTTCAAAGCCTTTTTCCCC
GAGAATGCGGTGGAGTATTTCGTCAGCTACTACGACTACTATCAGCCCGAGGCCTACCTCCCCGTCACAGACACCTATAT
CGAAAAGGACATGGCCATCAATGCGGAGATCGAAAAACTGCGATTGAGGGCCACGGCTTCGCTCCTGTCAGGGCGGAAAG
ATGTGCTTGTGGTCAGCTCCGTATCCTGTCTCTACGGTATGGCCAATCCTGAAGCTTTTTCCGAAAAGGTGATCAGCCTG
CACACGGGACAAAGGGCAGACAGGGATCATTTTATCCGCCTGCTGGTAGAGAGCTACTACACGAACAATAAAGTAGAGTT
CGAGAGCGGCAACTTCCGTGTCAAAGGCGACAGCGTGGACATATTCCCCGCCGTAGAAGGTTATGACGGCGTGGCATATA
GGGTGGAGTTTTGGGATGGAGAGGTCGAGCGGCTGAGTACCTTCGATCCGCGAACGGGACGGGAATACGGCCTGCTGTCG
GAGCTGAAGATATATCCGGCCAATCTCTTCGTGACGACTAAGGAGCAGGTGGATCGGGCAGTAGGGAAAATCGATGTGGA
TCTGGGCGCACAGGTCGATTTTCTGAAAGAGATCGGCAAACCATACGAAGCCAAACGCTTGTATGAGCGGGTCACGTATG
ACTTGGAAATGATCCGTGAGTTGGGTTATTGTTCCGGTATAGAGAACTATTCGCGCTACTTCGACGGTCGTGACACGGGC
GAACGTCCTTTCTGTCTGTTGGATTATTTCCCGGAGGATTTCCTGTTGGTCATAGACGAAAGCCATGTAACGATACCGCA
GATACGTGCCATGTACGGAGGCGATCGTTCGCGCAAGGAGAATCTGGTCGAATACGGATTCCGCCTGCCTGCCGCTCTCG
ACAATCGGCCGCTTCGCTTCGACGAGTTCGAAGCTCTCACCCCCCGGACCCTTTATATCAGTGCCACGCCTGCCGACTAT
GAGCTGAACAGAAGCGAAGGCGTGATCGTCGAACAGCTGATCCGTCCGACCGGACTGCTGGATCCCATCATCGACGTCAA
GCCGACGGCAAACCAAGTGGACGATCTGATGGAGGAGATAGCACGCTGCATCGAAAAGAAAGAGCGCGTACTGGTAACGA
CCCTCACCAAACGTATGGCAGAGGAGCTTAGCGAATACCTGCTACGCCACGGTATCAGCACCGGCTACATACACAGCGAT
GTGGACACGCTGGAGCGTGTGCGTATCATGGAAGACCTGCGCAAGGGGGTCTACGATGCACTCATCGGGGTGAATCTGCT
CCGCGAAGGATTGGACTTGCCAGAAGTTTCGCTTGTGGCTATTCTGGATGCGGATAAGGAAGGATTCCTGCGCTCGCATC
GTTCGCTCACGCAGACTGCAGGACGTGCCGCCCGGCACATTCATGGGCGTGTCATCTTCTACGCGGACAAGATCACCGAC
AGTATGCAGCTCACCATGGACGAGACTGCACGCCGGCGTGCAAAGCAACTGGCCTACAACGAAGTGCACGGCATCACCCC
CCAACAGATAGTGAAGAACAGTGCTGCCATTTGGGGAGAAGGCGATGTGTCGGCCTTGCAATCCGGCACAGAATCCGGTG
CGTACATAGAAGAGAGCAGCATGGTGGCTGCCGATCCTTTGGCCGACTATCTGAGCAAACCCAAGCTGGAAGCACTCATT
GCTTCGACCAAGAAGCAAATGCTGGCAGCAGCCAAAGAGCTGGACTTTCTGGAAGCGGCGCGACTTCGGGACGAAGCCGC
ACGATTGGAAAAGAAGCTGGAGCAACTCACAGCCTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(638-671)

UvrB interaction domain (UvrB_inter)

(158-250)

Type III restriction enzyme, res subunit (ResIII)

(9-84)

Ultra-violet resistance protein B (UvrB)

(553-593)

Helicase conserved C-terminal domain (Helicase_C)

(438-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

54.381

97.64

0.531
  uvrB Streptococcus pneumoniae R6

54.23

97.64

0.53
  uvrB Streptococcus pneumoniae D39

54.23

97.64

0.53

Multiple sequence alignment