Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   CS543_RS03415 Genome accession   NZ_CP024600
Coordinates   747987..750023 (+) Length   678 a.a.
NCBI ID   WP_004584907.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain KCOM 2801     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 742987..755023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS543_RS03390 (CS543_03380) - 743590..744258 (+) 669 WP_021665949.1 hypothetical protein -
  CS543_RS03395 (CS543_03385) rplM 744819..745274 (+) 456 WP_005873830.1 50S ribosomal protein L13 -
  CS543_RS03400 (CS543_03390) rpsI 745284..745670 (+) 387 WP_004584903.1 30S ribosomal protein S9 -
  CS543_RS03405 (CS543_03395) rpsB 745805..746650 (+) 846 WP_004584904.1 30S ribosomal protein S2 -
  CS543_RS03410 (CS543_03400) tsf 746789..747613 (+) 825 WP_005873789.1 translation elongation factor Ts -
  CS543_RS03415 (CS543_03405) uvrB 747987..750023 (+) 2037 WP_004584907.1 excinuclease ABC subunit UvrB Machinery gene
  CS543_RS03420 (CS543_03410) - 750020..751540 (-) 1521 WP_077084443.1 potassium/proton antiporter -
  CS543_RS12605 - 751669..751824 (-) 156 WP_353558820.1 DUF1661 domain-containing protein -
  CS543_RS12610 - 751769..751885 (+) 117 WP_130266925.1 DUF1661 domain-containing protein -
  CS543_RS03430 (CS543_03420) rseP 752016..753335 (+) 1320 WP_077084444.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 678 a.a.        Molecular weight: 76432.77 Da        Isoelectric Point: 4.8387

>NTDB_id=213464 CS543_RS03415 WP_004584907.1 747987..750023(+) (uvrB) [Porphyromonas gingivalis strain KCOM 2801]
MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLSHNKTLAAQLYGEFKAFFP
ENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISL
HTGQRADRDHFIRLLVESYYTNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS
ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELGYCSGIENYSRYFDGRDAG
ERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADY
ELNRSEGVIVEQLIRPTGLLDPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD
VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAARHIHGRVIFYADKITD
SMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGDVSALQSGTESGAYIEESSMVAADPLADYLSKPKLEALI
ASTKKQMLAAAKELDFLEAARLRDEAARLEKKLEQLTA

Nucleotide


Download         Length: 2037 bp        

>NTDB_id=213464 CS543_RS03415 WP_004584907.1 747987..750023(+) (uvrB) [Porphyromonas gingivalis strain KCOM 2801]
ATGGACTACAAACTCACTTCTCGATTCAAGCCCACGGGCGACCAGCCGGAAGCCATTCGCCAACTCGTACAGGGCATCAA
CGAAGGGATGCCGGCTCAGACGCTGCTCGGCGTAACGGGTTCGGGCAAAACTTTTACGGTGGCTAACGTGGTGGCGGCGG
TCAATCGTCCGACCCTTGTCCTGAGTCACAACAAGACCTTGGCAGCACAGCTATACGGAGAGTTCAAAGCCTTCTTCCCC
GAGAATGCGGTGGAGTATTTCGTCAGCTACTACGACTACTATCAGCCCGAGGCCTACCTCCCCGTCACAGACACCTATAT
CGAAAAGGACATGGCCATCAATGCGGAGATCGAAAAACTGCGATTGAGGGCCACGGCTTCGCTCCTGTCAGGGCGGAAAG
ATGTGCTTGTGGTCAGCTCCGTATCCTGTCTCTACGGTATGGCCAATCCTGAAGCTTTTTCCGAAAAGGTGATCAGCCTG
CACACGGGACAAAGGGCAGACAGGGATCATTTTATCCGCCTGCTGGTAGAGAGCTACTACACGAACAATAAAGTAGAGTT
CGAGAGCGGCAACTTCCGTGTCAAAGGCGACAGCGTGGACATATTCCCCGCCGTAGAAGGTTATGACGGCGTGGCATACA
GGGTGGAGTTTTGGGATGGAGAGGTCGAGCGGCTGAGTACCTTCGATCCGCGAACGGGACGGGAATACGGCCTGCTGTCG
GAGCTGAAGATATATCCGGCCAATCTCTTCGTGACGACTAAGGAGCAGGTGGATCGGGCAGTGGGGAAAATCGATGTGGA
TCTGGGCGCACAGGTCGATTTTCTGAAAGAGATCGGCAAACCATACGAAGCCAAACGCTTGTATGAGCGGGTCACGTATG
ACTTGGAAATGATCCGTGAGTTGGGTTATTGTTCCGGTATAGAAAACTATTCGCGCTACTTCGACGGTCGTGATGCAGGC
GAACGTCCTTTCTGCCTGTTGGATTATTTCCCGGAGGATTTCCTGTTGGTCATAGACGAAAGCCATGTAACGATACCGCA
GATACGTGCCATGTACGGAGGCGATCGTTCGCGCAAGGAGAATCTGGTCGAATACGGATTCCGCCTGCCTGCCGCTCTCG
ACAATCGGCCGCTTCGCTTCGACGAGTTCGAAGCTCTCACCCCCCGGACCCTTTATATCAGTGCCACGCCTGCCGACTAT
GAGCTGAACAGAAGCGAAGGCGTGATCGTCGAACAGCTGATCCGTCCGACCGGACTGCTGGATCCCATCATCGACGTCAA
GCCGACGGCAAACCAAGTGGACGATCTGATGGAGGAGATAGCACGCTGCATCGAAAAGAAGGAGCGCGTACTGGTAACGA
CTCTCACCAAACGTATGGCAGAGGAGCTTAGCGAATACCTGCTGCGCCACGGTATCAGCACCGGTTACATACACAGCGAT
GTGGACACGCTGGAGCGTGTGCGTATCATGGAAGACCTGCGCAAGGGGGTCTACGATGCACTCATCGGGGTGAATCTGCT
CCGCGAAGGATTGGACTTGCCGGAAGTTTCGCTTGTGGCTATTCTGGATGCGGATAAGGAAGGATTCCTGCGCTCGCATC
GTTCGCTCACGCAGACTGCAGGACGTGCCGCCCGGCACATTCATGGGCGTGTCATCTTCTACGCGGACAAGATCACCGAC
AGTATGCAGCTCACCATGGACGAGACTGCACGCCGGCGCGCAAAGCAACTGGCCTACAACGAAGCACACGGCATCACCCC
CCAACAGATAGTGAAGAACAGTGCTGCCATTTGGGGAGAAGGCGATGTGTCGGCCTTGCAATCCGGTACAGAATCCGGTG
CGTACATAGAAGAGAGCAGCATGGTGGCTGCCGATCCTTTGGCCGACTATCTGAGCAAACCCAAGCTGGAAGCACTCATT
GCTTCGACCAAGAAGCAAATGCTGGCAGCAGCCAAAGAGCTGGACTTTCTGGAAGCGGCACGACTTCGGGACGAAGCCGC
ACGATTGGAAAAGAAGCTGGAGCAACTCACAGCCTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(638-671)

Type III restriction enzyme, res subunit (ResIII)

(9-84)

UvrB interaction domain (UvrB_inter)

(158-250)

Helicase conserved C-terminal domain (Helicase_C)

(438-545)

Ultra-violet resistance protein B (UvrB)

(553-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

54.381

97.64

0.531
  uvrB Streptococcus pneumoniae R6

54.23

97.64

0.53
  uvrB Streptococcus pneumoniae D39

54.23

97.64

0.53