Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   CS543_RS03280 Genome accession   NZ_CP024600
Coordinates   721347..723443 (+) Length   698 a.a.
NCBI ID   WP_077084437.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain KCOM 2801     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 716347..728443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS543_RS03260 (CS543_03255) - 717495..718964 (-) 1470 WP_077083538.1 metallophosphoesterase family protein -
  CS543_RS03265 (CS543_03260) - 718967..719560 (-) 594 WP_004584828.1 hypothetical protein -
  CS543_RS03270 (CS543_03265) yihA 719661..720266 (+) 606 WP_021664570.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  CS543_RS03275 (CS543_03270) galE 720276..721304 (+) 1029 WP_077084436.1 UDP-glucose 4-epimerase GalE -
  CS543_RS03280 (CS543_03275) recG/mmsA 721347..723443 (+) 2097 WP_077084437.1 ATP-dependent DNA helicase RecG Machinery gene
  CS543_RS03285 (CS543_03280) - 723461..724093 (+) 633 WP_232522030.1 HAD family phosphatase -
  CS543_RS03290 (CS543_03285) - 724188..725645 (-) 1458 WP_013816162.1 leucine-rich repeat domain-containing protein -
  CS543_RS03300 (CS543_03295) - 726073..727653 (+) 1581 WP_077084439.1 exo-alpha-sialidase -
  CS543_RS11485 - 727815..727907 (+) 93 WP_125026600.1 DUF1661 domain-containing protein -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 78934.02 Da        Isoelectric Point: 8.6434

>NTDB_id=213463 CS543_RS03280 WP_077084437.1 721347..723443(+) (recG/mmsA) [Porphyromonas gingivalis strain KCOM 2801]
MDILSTKITYLTGVGPKRAEVLKEEIEVRTYLDLLHYFPFRYVDRSRFYAIREIRSDMPYIQLRGVLRNFSEVGEGRRKR
LTATFSDGTGSIELVWFKGIKYIRDKLQEGRRYIVFGKPVFFASGYNIAHPEIDAEEKAEQVAGGLTPIYHTTERMKSMG
LGSKQLQQLLYVLLNQVSATLTETLPPYILSSYGFVSYQEAIRQIHFPQGVAQLEAARTRLKFEELFYVQLHLIGSKLER
KARFQGIVFAQVGALFNTFYKEHLPFELTGAQKKVVREIRQDTLSGHQMNRLVQGNVGSGKTLVALLSMLLALDNGCQAC
LMAPTEILARQHHHTLSELLRPLGIEVGLLIGSCTARQRERLLPRLADGSLSIVVGTHALLEQGVAFHRLGMAVIDEQHR
FGVQQRARLWEKNLDTLPHILIMSATPIPRTLAMTLYGDLDISIIDELPPGRKPIQTLHHFDNDMAPVFRFLRSQLAAGR
QVYVVYPMIEGSETTDLKNLEDGFELFSSIFPDEGVTMVHGKMKAKEKEARMADFVSGRSRILLATTVIEVGVNVPNATV
MVVENADRFGLSQLHQLRGRVGRGGEQSYCILITGTKTGEDSRRRIQVMVETNDGFEIAEEDMRLRGFGDLEGTRQSGRQ
ISLRIANPARDTELIALSRSIAEQLLERDPELRHPDNQMLALRLNKLFPKEEDWSVIS

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=213463 CS543_RS03280 WP_077084437.1 721347..723443(+) (recG/mmsA) [Porphyromonas gingivalis strain KCOM 2801]
ATGGATATCCTATCGACCAAAATCACTTACCTGACCGGCGTAGGGCCGAAGCGGGCGGAAGTACTGAAGGAGGAAATAGA
AGTACGTACCTATCTGGATCTTCTCCATTATTTCCCCTTTCGCTATGTCGATAGGAGTCGATTTTATGCCATACGGGAGA
TACGCTCCGATATGCCCTATATCCAGCTGCGCGGTGTCCTTCGCAACTTCTCCGAGGTGGGCGAAGGACGGCGCAAGCGA
CTGACGGCTACTTTCTCGGACGGTACGGGAAGCATAGAGCTGGTTTGGTTTAAGGGTATCAAGTACATACGCGACAAACT
GCAGGAAGGACGGCGATATATCGTTTTCGGCAAGCCTGTTTTCTTCGCTTCCGGCTATAACATAGCACATCCCGAAATAG
ATGCGGAGGAGAAGGCAGAGCAGGTAGCCGGCGGACTGACTCCGATTTATCACACCACAGAGCGCATGAAGAGTATGGGG
CTGGGCAGCAAACAGCTCCAGCAACTTCTGTACGTACTCCTCAATCAGGTATCAGCCACACTGACGGAGACACTGCCGCC
TTACATCCTTTCGTCTTATGGGTTCGTCTCCTATCAGGAGGCCATCAGACAGATTCATTTCCCTCAGGGGGTGGCACAGC
TGGAAGCTGCCCGTACAAGACTCAAGTTCGAAGAGCTGTTCTATGTGCAGCTGCATCTGATCGGCAGCAAGCTGGAGCGT
AAAGCGCGTTTTCAGGGAATTGTTTTTGCTCAAGTGGGAGCCTTGTTCAATACATTCTACAAGGAACATCTGCCTTTCGA
ACTGACCGGTGCGCAGAAAAAGGTGGTACGGGAGATCCGGCAGGATACCCTCAGCGGACATCAAATGAACCGACTGGTGC
AGGGCAATGTGGGTAGCGGTAAAACTTTGGTAGCCTTGCTGTCCATGCTGTTGGCTCTGGACAATGGCTGTCAGGCTTGC
CTGATGGCTCCGACCGAAATTCTCGCCAGACAGCATCATCATACCCTGTCCGAGCTGTTGCGACCGCTTGGCATAGAAGT
CGGTTTGCTCATCGGAAGCTGTACCGCACGTCAGCGGGAACGCTTGCTTCCGCGTCTGGCCGATGGCTCGCTCTCCATCG
TCGTCGGCACACATGCCCTATTGGAACAGGGAGTGGCCTTTCATCGTTTGGGAATGGCAGTCATAGACGAGCAACACCGA
TTCGGCGTACAGCAGCGAGCCCGCCTGTGGGAAAAGAACCTCGACACTCTGCCCCATATTCTGATTATGAGTGCCACCCC
CATACCTCGTACTTTGGCCATGACGTTGTACGGCGATCTGGATATTTCCATCATCGACGAATTGCCTCCCGGCCGTAAGC
CCATACAGACGCTCCACCACTTCGACAACGATATGGCTCCGGTCTTTCGTTTCCTGCGATCTCAGCTTGCCGCAGGCCGG
CAAGTGTATGTGGTGTATCCGATGATCGAGGGGTCGGAGACGACCGATCTGAAGAATCTTGAAGATGGCTTCGAGCTGTT
CTCTTCCATTTTCCCCGATGAGGGCGTGACGATGGTGCACGGCAAGATGAAAGCCAAGGAAAAGGAGGCACGTATGGCGG
ACTTCGTCAGCGGTCGCTCCCGTATCTTGTTGGCTACGACGGTTATCGAAGTCGGAGTGAATGTCCCCAATGCTACGGTG
ATGGTAGTGGAGAATGCCGATCGTTTCGGCCTGTCGCAGCTACACCAGCTTAGAGGACGTGTAGGCCGCGGAGGAGAGCA
AAGCTATTGCATCCTGATCACGGGAACGAAAACAGGAGAGGATTCGCGTCGGCGTATTCAGGTGATGGTGGAGACGAACG
ATGGATTCGAAATAGCAGAGGAAGATATGCGCCTTCGTGGTTTCGGCGACTTGGAGGGTACGCGCCAGAGCGGTCGTCAG
ATCAGCCTTCGGATAGCCAATCCCGCACGAGATACGGAGCTGATAGCTCTTTCCCGAAGTATAGCGGAGCAACTACTGGA
GCGCGACCCCGAACTTCGCCATCCCGACAATCAAATGCTGGCTCTTCGTCTGAACAAACTTTTCCCCAAGGAGGAAGACT
GGAGTGTCATAAGCTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(272-431)

Helicase conserved C-terminal domain (Helicase_C)

(477-585)

RecG wedge domain (RecG_wedge)

(8-157)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(612-698)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

40.822

97.564

0.398
  recG/mmsA Streptococcus pneumoniae R36A

40.822

97.564

0.398
  recG Neisseria meningitidis strain C311

41.882

94.413

0.395
  recG Bacillus subtilis subsp. subtilis str. 168

38.416

97.708

0.375