Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   CS374_RS06980 Genome accession   NZ_CP024598
Coordinates   1524958..1526994 (+) Length   678 a.a.
NCBI ID   WP_099841426.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain KCOM 2798     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1519958..1531994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS374_RS06955 (CS374_06910) - 1520561..1521229 (+) 669 WP_099841425.1 hypothetical protein -
  CS374_RS06960 (CS374_06915) rplM 1521790..1522245 (+) 456 WP_005873830.1 50S ribosomal protein L13 -
  CS374_RS06965 (CS374_06920) rpsI 1522255..1522641 (+) 387 WP_004584903.1 30S ribosomal protein S9 -
  CS374_RS06970 (CS374_06925) rpsB 1522776..1523621 (+) 846 WP_021678142.1 30S ribosomal protein S2 -
  CS374_RS06975 (CS374_06930) tsf 1523760..1524584 (+) 825 WP_005873789.1 translation elongation factor Ts -
  CS374_RS06980 (CS374_06935) uvrB 1524958..1526994 (+) 2037 WP_099841426.1 excinuclease ABC subunit UvrB Machinery gene
  CS374_RS06985 (CS374_06940) - 1526991..1528511 (-) 1521 WP_099841427.1 potassium/proton antiporter -
  CS374_RS12125 - 1528640..1528795 (-) 156 WP_353558820.1 DUF1661 domain-containing protein -
  CS374_RS12130 - 1528740..1528856 (+) 117 WP_130266925.1 DUF1661 domain-containing protein -
  CS374_RS06995 (CS374_06950) rseP 1528987..1530306 (+) 1320 WP_077084444.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 678 a.a.        Molecular weight: 76520.84 Da        Isoelectric Point: 4.8085

>NTDB_id=213411 CS374_RS06980 WP_099841426.1 1524958..1526994(+) (uvrB) [Porphyromonas gingivalis strain KCOM 2798]
MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLSHNKTLAAQLYGEFKAFFP
ENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISL
HTGQRADRDHFIRLLVESYYTNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS
ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELGYCSGIENYSRYFDGRDAG
ERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADY
ELNRSEGVIVEQLIRPTGLLDPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD
VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAARHIHGRVIFYADKITD
SMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGDVSALQSSTESDAYIEESSMVAADPLADYLSKPKLEALI
ASTKKQMLAAAKELDFLEAARLRDEAARLEKKLEQLTA

Nucleotide


Download         Length: 2037 bp        

>NTDB_id=213411 CS374_RS06980 WP_099841426.1 1524958..1526994(+) (uvrB) [Porphyromonas gingivalis strain KCOM 2798]
ATGGACTACAAACTCACTTCTCGATTCAAGCCCACGGGCGACCAGCCGGAAGCCATTCGCCAACTCGTACAGGGTATCAA
CGAAGGGATGCCGGCTCAGACGCTGCTCGGCGTAACGGGTTCGGGCAAAACCTTTACGGTGGCTAACGTGGTGGCGGCGG
TCAATCGTCCGACCCTTGTCCTGAGTCACAACAAGACCTTGGCGGCACAGCTATACGGAGAGTTCAAAGCCTTTTTCCCC
GAGAATGCGGTGGAGTATTTCGTCAGCTACTACGACTACTATCAGCCCGAGGCCTACCTCCCCGTCACAGACACCTATAT
CGAAAAGGACATGGCCATCAATGCGGAGATCGAAAAACTGCGATTGAGGGCCACGGCTTCGCTCCTGTCAGGGCGGAAAG
ATGTGCTTGTGGTCAGCTCCGTATCCTGTCTCTACGGTATGGCCAATCCTGAAGCTTTTTCCGAAAAGGTGATCAGCCTG
CACACGGGACAAAGGGCAGACAGGGATCATTTTATCCGCCTGCTGGTAGAGAGCTACTACACGAACAATAAAGTAGAGTT
CGAGAGCGGCAACTTCCGTGTCAAAGGCGACAGCGTGGACATATTCCCCGCCGTAGAAGGTTATGACGGCGTGGCATATA
GGGTGGAGTTTTGGGATGGAGAGGTCGAGCGGCTGAGTACCTTCGATCCGCGAACGGGACGGGAATACGGCCTGCTGTCG
GAGCTGAAGATATATCCGGCCAATCTCTTCGTGACGACTAAGGAGCAGGTGGATCGGGCAGTAGGGAAAATCGATGTGGA
TCTGGGCGCACAGGTCGATTTTCTGAAAGAGATCGGCAAACCATACGAAGCCAAACGCTTGTATGAGCGGGTCACGTATG
ACTTGGAAATGATCCGTGAGTTGGGTTATTGTTCCGGTATAGAGAACTATTCGCGCTACTTCGACGGTCGTGACGCGGGC
GAACGTCCTTTCTGTCTGTTGGATTATTTCCCGGAGGATTTCCTGTTGGTCATAGACGAAAGCCATGTAACGATACCGCA
GATACGTGCCATGTACGGAGGCGATCGTTCGCGCAAGGAGAATCTGGTCGAATACGGATTCCGCCTGCCTGCCGCTCTCG
ACAATCGGCCGCTTCGCTTCGACGAGTTCGAAGCTCTCACCCCCCGGACCCTTTATATCAGTGCCACGCCTGCCGACTAT
GAGCTGAACAGAAGCGAAGGCGTGATCGTCGAACAGCTGATCCGTCCGACCGGACTGCTGGATCCCATCATCGACGTCAA
GCCGACGGCAAACCAAGTGGACGATCTGATGGAGGAGATAGCACGCTGCATCGAAAAGAAAGAGCGCGTACTGGTAACGA
CCCTCACCAAACGTATGGCAGAGGAGCTTAGCGAATACCTGCTACGCCACGGTATCAGCACCGGCTACATACACAGCGAT
GTGGACACGCTGGAGCGTGTGCGTATCATGGAAGACCTGCGCAAGGGGGTCTACGATGCACTCATCGGGGTGAATCTGCT
CCGCGAAGGATTGGACTTACCGGAAGTTTCGCTTGTGGCTATTCTGGATGCGGATAAGGAAGGATTCCTGCGCTCGCATC
GTTCGCTCACGCAGACTGCAGGACGTGCCGCCCGGCACATTCATGGGCGTGTCATCTTCTACGCGGACAAGATCACCGAC
AGTATGCAGCTCACCATGGACGAGACTGCACGCCGACGCGCAAAGCAACTGGCCTACAACGAAGCGCACGGCATCACCCC
CCAACAGATAGTGAAGAACAGTGCTGCCATTTGGGGAGAAGGCGATGTGTCGGCCTTGCAATCCAGTACAGAATCCGATG
CGTACATAGAAGAGAGCAGCATGGTGGCTGCCGATCCTTTGGCCGACTATCTGAGCAAACCCAAGCTGGAAGCACTCATT
GCTTCGACCAAGAAGCAAATGCTGGCAGCAGCCAAAGAGCTGGACTTTCTGGAAGCGGCGCGACTTCGGGACGAAGCCGC
ACGATTGGAAAAGAAGCTGGAGCAACTCACAGCCTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(438-545)

UvrB interaction domain (UvrB_inter)

(158-250)

Type III restriction enzyme, res subunit (ResIII)

(9-84)

UvrB/uvrC motif (UVR)

(638-671)

Ultra-violet resistance protein B (UvrB)

(553-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

53.927

97.64

0.527
  uvrB Streptococcus pneumoniae R6

53.776

97.64

0.525
  uvrB Streptococcus pneumoniae D39

53.776

97.64

0.525