Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   CS374_RS06830 Genome accession   NZ_CP024598
Coordinates   1496003..1498099 (+) Length   698 a.a.
NCBI ID   WP_021663084.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain KCOM 2798     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1491003..1503099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS374_RS06810 (CS374_06770) - 1492151..1493620 (-) 1470 WP_004584827.1 metallophosphoesterase family protein -
  CS374_RS06815 (CS374_06775) - 1493623..1494216 (-) 594 WP_021663081.1 hypothetical protein -
  CS374_RS06820 (CS374_06780) yihA 1494317..1494922 (+) 606 WP_004584829.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  CS374_RS06825 (CS374_06785) galE 1494932..1495960 (+) 1029 WP_021663083.1 UDP-glucose 4-epimerase GalE -
  CS374_RS06830 (CS374_06790) recG 1496003..1498099 (+) 2097 WP_021663084.1 ATP-dependent DNA helicase RecG Machinery gene
  CS374_RS06835 (CS374_06795) - 1498099..1498869 (+) 771 WP_099841415.1 HAD family phosphatase -
  CS374_RS06840 (CS374_06800) - 1498964..1500418 (-) 1455 WP_088443403.1 leucine-rich repeat domain-containing protein -
  CS374_RS06850 (CS374_06810) - 1500846..1502426 (+) 1581 WP_077084439.1 exo-alpha-sialidase -
  CS374_RS06855 (CS374_06815) - 1502491..1502619 (-) 129 WP_230491671.1 DUF1661 domain-containing protein -
  CS374_RS11775 - 1502588..1502680 (+) 93 WP_230493424.1 DUF1661 domain-containing protein -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 78901.93 Da        Isoelectric Point: 8.1764

>NTDB_id=213410 CS374_RS06830 WP_021663084.1 1496003..1498099(+) (recG) [Porphyromonas gingivalis strain KCOM 2798]
MDILSTKITYLTGVGPKRAEVLKEEIEVRTYLDLLHYFPFRYVDRSRFYAIREIRSDMPYIQLRGVLRNFSEVGEGRRKR
LTATFSDGTGSIELVWFKGIKYIRDKLQEGRRYIVFGKPVFFASGYNIAHPEIDAEEKAEQVAGGLTPIYHTTERMKSMG
LGSKQLQQLLYVLLNQVSATLTETLPPYILSSYGFVSYQEAIRQIHFPQGVAQLEAARTRLKFEELFYVQLHLIGSKLER
KARFQGIVFAQVGALFNTFYKEHLPFELTGAQKKVVREIRQDTLSGHQMNRLVQGDVGSGKTLVALLSMLLALDNGCQAC
LMAPTEILARQHHHTLSELLRPLGIEVGLLIGSCTARQRERLLPRLADGSLSIVVGTHALLEQGVAFHRLGMAVIDEQHR
FGVQQRARLWEKNLDTLPHILIMSATPIPRTLAMTLYGDLDISVIDELPPGRKPIQTLHHFDNDMAPVFRFLRSQLAAGR
QVYVVYPMIEGSETTDLKNLEDGFELFSSIFPDEGVTMVHGKMKAKEKEARMADFVSGRSRILLATTVIEVGVNVPNATV
MVVENADRFGLSQLHQLRGRVGRGGEQSYCILITGTKTGEDSRRRIQVMVETNDGFEIAEEDMRLRGFGDLEGTRQSGRQ
ISLRIANPARDTELIALSRSIAEQLLEHDPELRHPDNQMLALRLNKLFPKEEDWSVIS

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=213410 CS374_RS06830 WP_021663084.1 1496003..1498099(+) (recG) [Porphyromonas gingivalis strain KCOM 2798]
ATGGATATCCTATCGACCAAAATCACTTACCTGACCGGCGTAGGGCCGAAGCGGGCGGAAGTACTGAAGGAGGAAATAGA
AGTACGTACCTATCTGGATCTTCTCCATTATTTCCCCTTTCGCTATGTCGATAGGAGTCGATTTTATGCCATACGGGAGA
TACGCTCCGATATGCCCTATATCCAGCTGCGCGGTGTCCTTCGCAACTTCTCCGAGGTGGGCGAAGGACGGCGCAAGCGG
CTGACGGCTACTTTCTCGGACGGTACGGGAAGCATAGAGCTGGTTTGGTTCAAGGGTATCAAGTACATACGCGACAAACT
GCAGGAAGGACGGCGATATATCGTTTTCGGCAAGCCTGTTTTCTTCGCTTCCGGCTATAACATAGCACATCCCGAAATAG
ATGCGGAGGAGAAGGCAGAGCAGGTAGCCGGCGGACTGACTCCGATTTATCACACCACAGAGCGCATGAAGAGTATGGGG
CTGGGCAGCAAACAGCTCCAGCAACTCCTGTACGTACTCCTCAATCAGGTATCAGCCACACTGACGGAGACACTGCCGCC
TTACATCCTTTCGTCTTATGGGTTCGTCTCCTATCAGGAGGCCATCAGACAGATTCATTTCCCTCAGGGGGTGGCACAGC
TGGAAGCTGCCCGTACAAGACTCAAGTTCGAAGAGCTGTTCTATGTGCAGCTACATCTGATCGGCAGCAAGCTGGAGCGT
AAAGCGCGTTTTCAGGGAATTGTTTTTGCTCAAGTGGGAGCCTTGTTCAATACATTCTACAAGGAACATCTGCCTTTCGA
ACTGACCGGTGCGCAGAAAAAGGTGGTACGGGAGATCCGGCAGGATACCCTCAGCGGACATCAAATGAACCGACTGGTGC
AGGGCGATGTGGGTAGCGGTAAAACTTTGGTAGCCTTGCTGTCCATGCTGTTGGCTCTGGACAATGGCTGTCAGGCTTGC
CTGATGGCTCCGACCGAAATTCTCGCCAGACAGCATCATCATACCCTGTCCGAGCTGTTGCGACCGCTTGGCATAGAAGT
CGGTTTGCTCATCGGAAGCTGTACCGCACGTCAGCGGGAACGCTTGCTTCCGCGTCTGGCCGATGGCTCACTCTCCATCG
TCGTCGGCACGCATGCCCTATTGGAACAGGGAGTGGCCTTTCATCGTTTGGGAATGGCAGTCATAGACGAGCAGCACCGA
TTCGGCGTACAGCAGCGAGCCCGCTTGTGGGAAAAGAACCTCGACACTCTGCCCCATATTCTGATTATGAGTGCCACCCC
CATACCTCGTACATTGGCCATGACGTTGTACGGCGATCTGGATATTTCCGTCATCGACGAATTGCCTCCCGGCCGTAAGC
CCATACAGACGCTCCACCACTTCGACAACGATATGGCTCCGGTCTTTCGTTTCCTGCGATCTCAGCTTGCCGCAGGCCGA
CAGGTGTATGTGGTGTATCCGATGATCGAGGGGTCGGAGACGACCGATCTGAAGAATCTTGAAGATGGCTTCGAGCTGTT
CTCTTCCATTTTCCCCGATGAGGGCGTGACGATGGTGCACGGCAAGATGAAAGCCAAGGAAAAGGAGGCACGTATGGCGG
ACTTCGTCAGCGGTCGCTCCCGTATCTTGTTGGCTACGACGGTTATCGAAGTCGGAGTGAATGTCCCCAATGCTACGGTG
ATGGTAGTGGAGAATGCCGATCGTTTCGGCCTATCGCAGCTACACCAGCTTAGAGGACGTGTAGGCCGCGGAGGAGAGCA
AAGCTATTGCATCCTGATCACGGGAACGAAAACAGGAGAGGATTCGCGTCGGCGTATTCAGGTGATGGTGGAGACGAACG
ATGGATTCGAAATAGCAGAGGAAGATATGCGCCTTCGTGGTTTCGGCGACTTGGAGGGTACGCGCCAGAGCGGTCGTCAG
ATCAGCCTTCGGATAGCCAATCCCGCACGAGATACGGAGCTGATAGCTCTTTCCCGAAGTATAGCGGAGCAACTACTGGA
GCACGACCCCGAACTTCGCCATCCCGACAATCAAATGCTGGCTCTTCGTCTGAACAAACTTTTCCCCAAGGAGGAAGACT
GGAGTGTCATAAGCTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(272-431)

Helicase conserved C-terminal domain (Helicase_C)

(477-585)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(612-698)

RecG wedge domain (RecG_wedge)

(8-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

42.185

94.413

0.398
  recG/mmsA Streptococcus pneumoniae R6

40.822

97.564

0.398
  recG/mmsA Streptococcus pneumoniae R36A

40.822

97.564

0.398
  recG Bacillus subtilis subsp. subtilis str. 168

38.71

97.708

0.378

Multiple sequence alignment