Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   CS059_RS01860 Genome accession   NZ_CP024597
Coordinates   420148..422244 (-) Length   698 a.a.
NCBI ID   WP_099780335.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain KCOM 2796     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 415148..427244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS059_RS12200 - 415565..415657 (-) 93 WP_230455995.1 DUF1661 domain-containing protein -
  CS059_RS01835 (CS059_01825) - 415626..415754 (+) 129 WP_230491671.1 DUF1661 domain-containing protein -
  CS059_RS01840 (CS059_01830) - 415819..417399 (-) 1581 WP_232523913.1 exo-alpha-sialidase -
  CS059_RS01850 (CS059_01840) - 417826..419283 (+) 1458 WP_099780333.1 leucine-rich repeat domain-containing protein -
  CS059_RS01855 (CS059_01845) - 419378..420148 (-) 771 WP_099780334.1 HAD family phosphatase -
  CS059_RS01860 (CS059_01850) recG/mmsA 420148..422244 (-) 2097 WP_099780335.1 ATP-dependent DNA helicase RecG Machinery gene
  CS059_RS01865 (CS059_01855) galE 422287..423315 (-) 1029 WP_099780336.1 UDP-glucose 4-epimerase GalE -
  CS059_RS01870 (CS059_01860) yihA 423325..423930 (-) 606 WP_004584829.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  CS059_RS01875 (CS059_01865) - 424031..424624 (+) 594 WP_021663081.1 hypothetical protein -
  CS059_RS01880 (CS059_01870) - 424627..426096 (+) 1470 WP_099780337.1 metallophosphoesterase family protein -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 78935.04 Da        Isoelectric Point: 8.6419

>NTDB_id=213367 CS059_RS01860 WP_099780335.1 420148..422244(-) (recG/mmsA) [Porphyromonas gingivalis strain KCOM 2796]
MDILSTKITYLTGVGPKRAEVLKEEIEVRTYLDLLHYFPFRYVDRSRFYAIREIRSDMPYIQLRGVLRNFSEVGEGRRKR
LTATFSDGTGSIELVWFKGIKYIRDKLQEGRRYIVFGKPVFFASGYNIAHPEIDAEEKAEQVAGGLTPIYHTTERMKSMG
LGSKQLQQLLYVLLNQVSATLTETLPPYILSSYGFVSYQEAIRQIHFPQGVAQLEAARTRLKFEELFYVQLHLIGSKLER
KARFQGIVFAQVGALFNTFYKEHLPFELTGAQKKVVREIRKDTLSGHQMNRLVQGDVGSGKTLVALLSMLLALDNGCQAC
LMAPTEILARQHHHTLSELLRPLGIEVGLLIGSCTARQRERLLPRLADGSLSIVVGTHALLEQGVAFRRLGMAVIDEQHR
FGVQQRARLWEKNLDTLPHILIMSATPIPRTLAMTLYGDLDISIIDELPPGRKPIQTLHHFDNDMAPVFRFLRSQLAAGR
QVYVVYPMIEGSETTDLKNLEDGFELFSSIFPDEGVTMVHGKMKAKEKEARMADFVSGRSRILLATTVIEVGVNVPNATV
MVVENADRFGLSQLHQLRGRVGRGGEQSYCILITGTKTGEDSRRRIQVMVETNDGFEIAEEDMRLRGFGDLEGTRQSGRQ
ISLRIANPARDTELIALSRSIAEQLLEHDPELRHPDNQMLALRLNKLFPKEEDWSVIS

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=213367 CS059_RS01860 WP_099780335.1 420148..422244(-) (recG/mmsA) [Porphyromonas gingivalis strain KCOM 2796]
ATGGATATCCTATCGACCAAAATCACTTACCTGACCGGCGTAGGGCCGAAGCGGGCGGAAGTACTGAAGGAGGAAATAGA
AGTACGTACCTATCTGGATCTTCTCCATTATTTCCCCTTTCGCTATGTCGATAGGAGTCGATTTTATGCCATACGGGAGA
TACGCTCCGATATGCCCTATATCCAGCTGCGCGGTGTCCTTCGCAACTTCTCCGAGGTGGGCGAAGGACGGCGCAAGCGG
CTGACGGCTACTTTCTCGGACGGTACGGGAAGCATAGAGCTGGTTTGGTTCAAGGGTATCAAGTACATACGCGACAAACT
GCAGGAAGGACGGCGATATATCGTTTTCGGCAAGCCTGTTTTCTTCGCTTCCGGCTATAACATAGCACATCCCGAAATAG
ATGCGGAGGAGAAGGCAGAGCAGGTAGCCGGCGGACTGACTCCGATTTATCACACCACAGAGCGCATGAAGAGTATGGGG
CTGGGCAGCAAACAGCTCCAGCAACTCCTGTACGTACTCCTCAATCAGGTATCAGCCACACTGACGGAGACACTGCCGCC
TTACATCCTTTCGTCTTATGGGTTCGTCTCCTATCAGGAGGCCATCAGACAGATTCATTTCCCTCAGGGGGTGGCACAGC
TGGAAGCTGCCCGTACAAGACTCAAGTTCGAAGAGCTGTTCTATGTGCAGCTACATCTGATCGGCAGCAAGCTGGAGCGT
AAAGCGCGTTTTCAGGGAATTGTTTTTGCTCAAGTGGGAGCCTTGTTCAATACATTCTACAAGGAACATCTGCCTTTCGA
ACTGACCGGTGCGCAGAAAAAGGTGGTACGGGAGATCCGGAAGGATACCCTCAGCGGACATCAAATGAACCGACTGGTGC
AGGGCGATGTGGGTAGCGGTAAAACTTTGGTAGCCTTGCTGTCCATGCTGTTGGCTCTGGACAATGGCTGTCAGGCTTGC
CTGATGGCTCCGACCGAAATTCTCGCCAGACAGCATCATCATACCCTGTCCGAGCTGTTGCGACCGCTTGGCATAGAAGT
CGGTTTGCTCATCGGAAGCTGTACCGCACGTCAGCGGGAACGCTTGCTTCCGCGTCTGGCCGATGGCTCGCTCTCCATCG
TCGTCGGTACGCATGCCCTATTGGAACAGGGAGTGGCCTTTCGTCGTTTGGGAATGGCAGTCATAGACGAGCAGCACCGA
TTCGGCGTACAGCAGCGAGCCCGCTTGTGGGAAAAGAACCTCGACACTCTGCCCCATATTCTGATTATGAGTGCCACCCC
CATACCTCGTACATTGGCCATGACGTTGTACGGCGATCTGGATATTTCCATCATCGACGAATTGCCTCCCGGCCGTAAGC
CCATACAGACGCTCCACCACTTCGACAACGATATGGCTCCGGTCTTTCGTTTCCTGCGATCTCAGCTTGCCGCAGGCCGG
CAGGTGTATGTGGTGTATCCGATGATCGAGGGGTCGGAGACGACCGATCTGAAGAATCTTGAAGATGGCTTCGAGCTGTT
CTCTTCCATTTTCCCCGATGAGGGCGTGACGATGGTGCACGGCAAGATGAAAGCCAAGGAAAAGGAGGCACGTATGGCGG
ACTTCGTCAGCGGTCGCTCCCGTATCTTGTTGGCTACGACGGTTATCGAAGTCGGAGTGAATGTCCCCAATGCTACGGTG
ATGGTAGTGGAGAATGCCGATCGTTTCGGCCTGTCGCAGCTACACCAGCTTAGAGGACGTGTAGGCCGCGGAGGAGAGCA
AAGCTATTGCATCCTGATCACGGGAACGAAAACAGGAGAGGATTCGCGTCGGCGTATTCAGGTGATGGTGGAGACGAACG
ATGGATTCGAAATAGCAGAGGAAGATATGCGCCTTCGTGGTTTCGGCGACTTGGAGGGTACGCGCCAGAGCGGTCGTCAG
ATCAGCCTTCGGATAGCCAATCCCGCACGAGATACGGAGCTGATAGCTCTTTCCCGAAGTATAGCGGAGCAACTACTGGA
GCACGACCCCGAACTTCGCCATCCCGACAATCAAATGCTGGCTCTTCGTCTGAACAAACTTTTCCCCAAGGAGGAAGACT
GGAGTGTCATAAGCTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(477-585)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(612-698)

RecG wedge domain (RecG_wedge)

(8-157)

DEAD/DEAH box helicase (DEAD)

(272-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

40.969

97.564

0.4
  recG/mmsA Streptococcus pneumoniae R36A

40.969

97.564

0.4
  recG Neisseria meningitidis strain C311

41.97

94.556

0.397
  recG Bacillus subtilis subsp. subtilis str. 168

38.563

97.708

0.377

Multiple sequence alignment