Detailed information NTG0213367

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BVG18_RS01435
• Genome accession: NZ_CP019143
• Coordinates: 310794..311654 (-)
• Length: 286 a.a.
• NCBI ID: WP_004281094.1
• Uniprot ID: N9QGW2
• Organism: Acinetobacter lwoffii strain ZS207
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 305794..316654

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BVG18_RS01410 (BVG18_07030)	recN	305930..307591 (-)	1662	WP_004644925.1	DNA repair protein RecN	-
BVG18_RS01415 (BVG18_07035)	-	308034..308357 (+)	324	WP_004281089.1	pyrimidine/purine nucleoside phosphorylase	-
BVG18_RS01420 (BVG18_07040)	rlmB	308492..309241 (+)	750	WP_004281091.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
BVG18_RS01425 (BVG18_07045)	-	309245..310171 (+)	927	WP_016806884.1	DMT family transporter	-
BVG18_RS01430 (BVG18_07050)	coaE	310193..310792 (-)	600	WP_004281093.1	dephospho-CoA kinase	-
BVG18_RS01435 (BVG18_07055)	pilD	310794..311654 (-)	861	WP_004281094.1	A24 family peptidase	Machinery gene
BVG18_RS01440 (BVG18_07060)	pilC	311654..312883 (-)	1230	WP_004281096.1	type II secretion system F family protein	Machinery gene
BVG18_RS01445 (BVG18_07065)	pilB	312915..314624 (-)	1710	WP_086044367.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BVG18_RS01450 (BVG18_07070)	tpiA	314902..315693 (+)	792	WP_086044368.1	triose-phosphate isomerase	-
BVG18_RS01455 (BVG18_07075)	secG	315707..316036 (+)	330	WP_004281101.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32010.35 Da
• Isoelectric Point: 8.0624

>NTDB_id=213367 BVG18_RS01435 WP_004281094.1 310794..311654(-) (pilD) [Acinetobacter lwoffii strain ZS207]
MHDFLQYFIQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRTDCQMFLHPEQPVIDETKLSLSKPASACPKCHQP
IRWYQNIPVISWLVLRGKCSNCQNPISIRYPLVEILTAVCALLVVAVFGPTLQMLFGLILTYVLIALTFIDFDTQLLPDR
YTLPLAALGLGVNSYALYTLPGAAIWGYIIGFLCLWVVYYAFKIVTGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide

• Length: 861 bp

>NTDB_id=213367 BVG18_RS01435 WP_004281094.1 310794..311654(-) (pilD) [Acinetobacter lwoffii strain ZS207]
ATGCACGATTTTCTTCAATATTTTATTCAAAACCCAACGGCGTTGTATATCGCAGTTGGGCTTTTTAGTTTATGTATCGG
CAGCTTTCTGAATGTCGTGATTTACCGCACTCCCAAGATGATGGAACAGGAATGGCGTACTGATTGCCAGATGTTCCTGC
ATCCGGAACAGCCGGTGATTGATGAAACTAAGTTAAGTTTAAGCAAACCCGCTTCAGCTTGCCCCAAGTGTCATCAGCCA
ATCCGCTGGTACCAGAATATTCCCGTCATTAGCTGGCTGGTCCTGCGCGGAAAATGTAGCAACTGCCAGAATCCGATCAG
CATCCGTTATCCTTTGGTTGAAATTCTGACGGCAGTTTGTGCACTCCTTGTCGTAGCAGTATTTGGCCCTACCCTACAAA
TGCTGTTTGGCCTGATCCTGACTTATGTGCTGATCGCACTCACTTTTATTGATTTTGACACCCAGTTATTGCCTGACCGT
TATACTTTACCCTTGGCCGCGCTAGGTTTGGGGGTAAATAGTTATGCACTTTATACCTTACCCGGTGCTGCCATCTGGGG
CTATATTATTGGTTTCCTGTGTCTGTGGGTGGTGTATTATGCATTTAAAATCGTTACCGGCAAGGAAGGTATGGGCTATG
GCGATTTTAAATTGCTTGCCGCCCTGGGTGCCTGGATGGGGCCTTTATTACTGCCTTTAATTGTGCTGCTGTCTTCTCTG
GTTGGTGCGATTATCGGGATTATCCTACTGAAAGTCCGCAAGGAAAATCAGCCTTTTGCCTTTGGTCCCTATATCGCGAT
TGCCGGCTGGATTGCTTTTTTGTGGGGCGAGCAGATTATGAAAGTGTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

3D structure

• AlphaFold DB: N9QGW2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	80	99.65	0.797
pilD	Acinetobacter baumannii D1279779	79.649	99.65	0.794
pilD	Vibrio cholerae strain A1552	51.237	98.951	0.507
pilD	Vibrio campbellii strain DS40M4	49.826	100	0.5
pilD	Neisseria gonorrhoeae MS11	46.909	96.154	0.451