Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   CS059_RS01725 Genome accession   NZ_CP024597
Coordinates   393462..395498 (-) Length   678 a.a.
NCBI ID   WP_097615927.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain KCOM 2796     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 388462..400498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS059_RS01715 (CS059_01705) rseP 390147..391466 (-) 1320 WP_021663649.1 RIP metalloprotease RseP -
  CS059_RS12195 - 391597..391713 (-) 117 WP_371262632.1 DUF1661 domain-containing protein -
  CS059_RS11230 - 391658..391795 (+) 138 WP_353308683.1 DUF1661 domain-containing protein -
  CS059_RS01720 (CS059_01710) - 391945..393465 (+) 1521 WP_097615928.1 potassium/proton antiporter -
  CS059_RS01725 (CS059_01715) uvrB 393462..395498 (-) 2037 WP_097615927.1 excinuclease ABC subunit UvrB Machinery gene
  CS059_RS01730 (CS059_01720) tsf 395851..396675 (-) 825 WP_004584905.1 translation elongation factor Ts -
  CS059_RS01735 (CS059_01725) rpsB 396814..397659 (-) 846 WP_099780327.1 30S ribosomal protein S2 -
  CS059_RS01740 (CS059_01730) rpsI 397794..398180 (-) 387 WP_004584903.1 30S ribosomal protein S9 -
  CS059_RS01745 (CS059_01735) rplM 398190..398645 (-) 456 WP_005873830.1 50S ribosomal protein L13 -
  CS059_RS01755 (CS059_01745) - 399209..399877 (-) 669 WP_004584900.1 hypothetical protein -

Sequence

Protein


Download         Length: 678 a.a.        Molecular weight: 76390.69 Da        Isoelectric Point: 4.8387

>NTDB_id=213366 CS059_RS01725 WP_097615927.1 393462..395498(-) (uvrB) [Porphyromonas gingivalis strain KCOM 2796]
MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLSHNKTLAAQLYGEFKAFFP
ENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISL
HTGQRADRDHFIRLLVESYYTNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS
ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELGYCSGIENYSRYFDGRDAG
ERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADY
ELNRSEGVIVEQLIRPTGLLDPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD
VDTLERVRIMEDLRKGGYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAARHIHGRVIFYADKITD
SMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGDVSALQSGTESGAYIEESSMVAADPLADYLSKPKLEALI
ASTKKQMLAAAKELDFLEAARLRDEAARLEKKLEQLTA

Nucleotide


Download         Length: 2037 bp        

>NTDB_id=213366 CS059_RS01725 WP_097615927.1 393462..395498(-) (uvrB) [Porphyromonas gingivalis strain KCOM 2796]
ATGGACTACAAACTCACTTCTCGATTCAAGCCCACGGGCGACCAGCCGGAAGCCATTCGCCAACTCGTACAGGGCATCAA
CGAAGGGATGCCGGCTCAGACGCTGCTCGGCGTAACGGGTTCGGGCAAAACCTTTACGGTGGCTAACGTGGTGGCGGCGG
TCAATCGTCCGACCCTTGTCCTGAGTCACAACAAGACCTTGGCGGCACAGCTATACGGAGAGTTCAAAGCCTTCTTCCCC
GAGAATGCGGTGGAGTATTTCGTCAGCTACTACGACTACTATCAGCCCGAGGCCTACCTCCCCGTCACAGACACCTATAT
CGAAAAGGACATGGCCATCAATGCGGAGATCGAAAAACTGCGATTGAGGGCCACGGCTTCGCTCCTGTCAGGGCGGAAAG
ATGTGCTTGTAGTCAGCTCCGTATCCTGTCTATACGGTATGGCCAATCCTGAAGCTTTTTCCGAAAAGGTAATCAGCCTG
CACACGGGACAAAGGGCAGACAGGGATCATTTTATCCGCCTGCTGGTAGAGAGCTACTACACGAACAATAAAGTAGAGTT
CGAGAGCGGCAATTTCCGTGTCAAAGGAGACAGCGTGGACATATTCCCCGCCGTAGAAGGATATGACGGCGTGGCATACA
GGGTGGAGTTTTGGGATGGAGAGGTCGAGCGACTGAGTACCTTCGATCCGCGAACGGGACGGGAATATGGCCTGCTGTCG
GAGCTGAAGATATATCCGGCCAATCTCTTCGTGACGACTAAGGAGCAGGTGGATCGGGCAGTGGGGAAAATCGATGTGGA
TCTGGGCGCACAGGTCGATTTTCTGAAAGAGATCGGCAAACCATACGAAGCCAAACGCTTGTATGAGCGGGTCACGTATG
ACTTGGAAATGATCCGTGAGTTGGGTTATTGTTCCGGTATAGAAAACTATTCGCGCTACTTCGACGGTCGTGATGCGGGC
GAACGTCCTTTCTGTCTGTTGGATTATTTCCCGGAGGATTTCCTGTTGGTCATAGACGAAAGCCATGTAACGATACCGCA
GATACGTGCCATGTACGGAGGCGATCGTTCGCGCAAGGAGAATCTGGTCGAATACGGATTCCGCCTGCCTGCCGCTCTCG
ACAATCGGCCGCTTCGCTTCGACGAGTTCGAAGCTCTCACCCCCCGGACCCTTTATATCAGTGCCACACCTGCCGACTAT
GAGCTGAACAGAAGCGAAGGCGTGATCGTCGAACAGCTGATCCGTCCGACCGGACTGCTGGATCCCATCATCGACGTCAA
GCCGACGGCAAACCAAGTGGACGATCTGATGGAGGAGATAGCACGCTGCATCGAAAAGAAAGAGCGCGTACTGGTAACGA
CTCTCACCAAACGTATGGCAGAGGAGCTTAGCGAATACCTGCTGCGCCACGGTATCAGCACCGGCTACATACACAGCGAT
GTGGACACGCTGGAGCGTGTGCGTATCATGGAAGACCTGCGCAAGGGGGGCTACGATGCACTCATCGGGGTGAATCTGCT
CCGCGAAGGATTGGACTTGCCGGAAGTTTCGCTTGTGGCTATTCTGGATGCGGATAAGGAAGGATTCCTGCGCTCGCATC
GTTCGCTCACGCAGACTGCAGGACGTGCCGCCCGGCACATTCATGGGCGTGTCATCTTCTACGCGGACAAGATCACCGAC
AGTATGCAGCTCACCATGGACGAGACTGCACGCCGGCGCGCAAAGCAACTGGCCTATAACGAAGCGCACGGCATCACCCC
CCAACAGATAGTGAAGAACAGTGCTGCCATTTGGGGAGAAGGCGATGTGTCGGCCTTGCAATCCGGCACAGAATCCGGTG
CGTACATAGAAGAGAGCAGCATGGTGGCTGCCGATCCTTTGGCCGACTATCTGAGCAAACCCAAGCTGGAAGCACTCATT
GCTTCGACCAAGAAGCAAATGCTGGCAGCAGCCAAAGAGCTGGACTTTCTGGAAGCGGCGCGACTTCGGGACGAAGCCGC
ACGATTGGAAAAGAAGCTGGAGCAACTCACAGCCTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(638-671)

Type III restriction enzyme, res subunit (ResIII)

(9-84)

UvrB interaction domain (UvrB_inter)

(158-250)

Ultra-violet resistance protein B (UvrB)

(553-593)

Helicase conserved C-terminal domain (Helicase_C)

(438-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

54.23

97.64

0.53
  uvrB Streptococcus pneumoniae R6

54.079

97.64

0.528
  uvrB Streptococcus pneumoniae D39

54.079

97.64

0.528