Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FORC54_RS15085 Genome accession   NZ_CP019121
Coordinates   2988383..2989015 (+) Length   210 a.a.
NCBI ID   WP_011079297.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_054     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2983383..2994015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC54_RS15065 (FORC54_2717) - 2985272..2985751 (+) 480 WP_039450016.1 TIGR02444 family protein -
  FORC54_RS15070 (FORC54_2718) - 2985897..2986874 (+) 978 WP_038939569.1 hydrolase -
  FORC54_RS15075 (FORC54_2719) - 2986930..2987142 (+) 213 WP_011079299.1 YheU family protein -
  FORC54_RS15080 (FORC54_2720) - 2987271..2988140 (+) 870 WP_072609188.1 phosphoribulokinase -
  FORC54_RS15085 (FORC54_2721) crp 2988383..2989015 (+) 633 WP_011079297.1 cAMP-activated global transcriptional regulator CRP Regulator
  FORC54_RS15090 (FORC54_2722) - 2989127..2989918 (-) 792 WP_038939567.1 DUF1338 domain-containing protein -
  FORC54_RS15095 (FORC54_2723) astD 2990130..2991587 (-) 1458 WP_038939566.1 succinylglutamate-semialdehyde dehydrogenase -
  FORC54_RS15100 (FORC54_2724) astA 2991605..2992624 (-) 1020 WP_038964244.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23538.33 Da        Isoelectric Point: 7.8387

>NTDB_id=213352 FORC54_RS15085 WP_011079297.1 2988383..2989015(+) (crp) [Vibrio vulnificus strain FORC_054]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=213352 FORC54_RS15085 WP_011079297.1 2988383..2989015(+) (crp) [Vibrio vulnificus strain FORC_054]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGCACGCTAATTCATGCGGGCGAAAAAGCAGAAACACTTTACTACATCGTAAAAGGTTCTGTTGCGGTACTGATTAAGG
ATGAAGAAGGTAAAGAAATGATCCTTTCTTACCTAAATCAAGGTGACTTTATTGGTGAACTAGGCCTCTTTGAAGAAGGC
CAAGAGCGTACCGCTTGGGTTCGCGCAAAATCTCCTTGTGAAGTCGCGGAAATCTCATTCAAGAAATTCCGTCAGCTAAT
TCAGGTAAACCCTGACATCCTGATGCGTCTATCTGCTCAGATGGCAAGCCGTCTGCAAGTGACCAGCCAAAAAGTGGGTG
ACTTGGCATTCCTAGACGTAACTGGTCGTATCGCTCAGACGCTATTGAATCTTGCTAAACAACCAGATGCGATGACGCAC
CCAGATGGCATGCAGATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTCGAAGAGCAAAACCTGATTTCTGCACACGGCAAGACTATCGTTGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment