Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   CS549_RS00250 Genome accession   NZ_CP024596
Coordinates   68787..69395 (+) Length   202 a.a.
NCBI ID   WP_021676778.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain KCOM 3131     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 63787..74395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS549_RS00225 (CS549_00225) rhuM 64199..64642 (-) 444 WP_052081932.1 RhuM family protein -
  CS549_RS00230 (CS549_00230) - 64623..65855 (-) 1233 WP_099837398.1 site-specific integrase -
  CS549_RS00240 (CS549_00240) - 66499..67188 (+) 690 Protein_46 transposase -
  CS549_RS11525 (CS549_00245) - 67267..68351 (+) 1085 Protein_47 IS5 family transposase -
  CS549_RS00250 (CS549_00250) ruvA 68787..69395 (+) 609 WP_021676778.1 Holliday junction branch migration protein RuvA Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21542.93 Da        Isoelectric Point: 5.3412

>NTDB_id=213328 CS549_RS00250 WP_021676778.1 68787..69395(+) (ruvA) [Porphyromonas gingivalis strain KCOM 3131]
MIEYLKGAIVDLTPTNLVIECAGVGYDVNVSLTTYSAYQGKKEGLIWITQLIREDAHLLYGFSTKEERTLFGQLTSVSGV
GPTTARLILSSYAPQELAALITTGQADALKAVKGIGLKTAQRIIVDLKGKIQLETSSDEILSARTAVGDAALNTIASGEE
AISALKMLGFADPAIRKAVKSILSEDSSLAVEDIIKRALRML

Nucleotide


Download         Length: 609 bp        

>NTDB_id=213328 CS549_RS00250 WP_021676778.1 68787..69395(+) (ruvA) [Porphyromonas gingivalis strain KCOM 3131]
ATGATAGAGTATCTCAAGGGAGCAATAGTCGATTTGACGCCAACAAACCTCGTGATCGAGTGTGCGGGAGTGGGTTATGA
TGTGAATGTCTCGCTCACCACTTATTCTGCCTATCAGGGGAAGAAAGAGGGACTTATTTGGATTACACAACTGATCCGAG
AAGATGCCCATTTATTGTATGGCTTTTCCACGAAAGAAGAGCGTACGCTCTTCGGCCAACTCACATCTGTCAGCGGTGTC
GGGCCTACGACGGCACGGCTCATCCTATCCTCCTATGCTCCTCAAGAGCTGGCCGCACTCATTACCACAGGGCAGGCCGA
TGCGCTGAAAGCCGTGAAGGGCATCGGCCTGAAGACCGCTCAGCGTATCATCGTGGATCTGAAAGGTAAGATACAGCTGG
AAACCTCCTCAGACGAGATCTTGTCTGCACGGACGGCTGTAGGAGATGCTGCTCTGAATACCATAGCTTCGGGAGAAGAA
GCCATCAGTGCTCTAAAGATGCTTGGCTTTGCCGATCCGGCTATACGCAAAGCGGTCAAGTCCATTCTCTCCGAGGATTC
GTCCTTAGCTGTCGAAGATATTATCAAGCGAGCATTACGAATGTTATAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-200)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

37.143

100

0.386
  ruvA Streptococcus pneumoniae TIGR4

37.624

100

0.376
  ruvA Streptococcus pneumoniae R6

37.129

100

0.371
  ruvA Streptococcus pneumoniae D39

37.129

100

0.371

Multiple sequence alignment