Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   CS548_RS09575 Genome accession   NZ_CP024594
Coordinates   2102746..2104782 (-) Length   678 a.a.
NCBI ID   WP_004584907.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain KCOM 2805     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2097746..2109782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS548_RS09565 (CS548_09530) rseP 2099433..2100752 (-) 1320 WP_021663649.1 RIP metalloprotease RseP -
  CS548_RS12425 - 2100883..2100999 (-) 117 WP_130266925.1 DUF1661 domain-containing protein -
  CS548_RS12430 - 2100944..2101081 (+) 138 WP_160327892.1 DUF1661 domain-containing protein -
  CS548_RS09570 (CS548_09535) - 2101229..2102749 (+) 1521 WP_021663106.1 potassium/proton antiporter -
  CS548_RS09575 (CS548_09540) uvrB 2102746..2104782 (-) 2037 WP_004584907.1 excinuclease ABC subunit UvrB Machinery gene
  CS548_RS09580 (CS548_09545) - 2105086..2105886 (-) 801 WP_198404201.1 hypothetical protein -
  CS548_RS09585 (CS548_09550) tsf 2106516..2107340 (-) 825 WP_005873789.1 translation elongation factor Ts -
  CS548_RS09590 (CS548_09555) rpsB 2107479..2108324 (-) 846 WP_004584904.1 30S ribosomal protein S2 -
  CS548_RS09595 (CS548_09560) rpsI 2108459..2108845 (-) 387 WP_004584903.1 30S ribosomal protein S9 -
  CS548_RS09600 (CS548_09565) rplM 2108855..2109310 (-) 456 WP_005873830.1 50S ribosomal protein L13 -

Sequence

Protein


Download         Length: 678 a.a.        Molecular weight: 76432.77 Da        Isoelectric Point: 4.8387

>NTDB_id=213290 CS548_RS09575 WP_004584907.1 2102746..2104782(-) (uvrB) [Porphyromonas gingivalis strain KCOM 2805]
MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLSHNKTLAAQLYGEFKAFFP
ENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISL
HTGQRADRDHFIRLLVESYYTNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS
ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELGYCSGIENYSRYFDGRDAG
ERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADY
ELNRSEGVIVEQLIRPTGLLDPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD
VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAARHIHGRVIFYADKITD
SMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGDVSALQSGTESGAYIEESSMVAADPLADYLSKPKLEALI
ASTKKQMLAAAKELDFLEAARLRDEAARLEKKLEQLTA

Nucleotide


Download         Length: 2037 bp        

>NTDB_id=213290 CS548_RS09575 WP_004584907.1 2102746..2104782(-) (uvrB) [Porphyromonas gingivalis strain KCOM 2805]
ATGGACTACAAACTCACTTCTCGATTCAAGCCCACGGGCGACCAGCCGGAAGCCATTCGCCAACTCGTACAGGGCATCAA
CGAAGGGATGCCGGCTCAGACGCTGCTCGGCGTAACGGGTTCGGGCAAAACCTTTACGGTGGCTAACGTGGTGGCGGCGG
TCAATCGTCCGACCCTTGTCCTGAGTCACAACAAGACCTTGGCGGCACAGCTATACGGAGAGTTCAAAGCCTTCTTCCCC
GAGAATGCGGTGGAGTATTTCGTCAGCTACTACGACTACTATCAGCCCGAGGCCTACCTCCCCGTCACAGACACCTATAT
CGAAAAGGACATGGCCATCAACGCGGAGATCGAAAAACTGCGATTGAGGGCCACGGCTTCGCTCCTGTCAGGGCGGAAAG
ATGTGCTTGTGGTCAGCTCCGTATCCTGTCTCTACGGTATGGCCAATCCTGAAGCTTTTTCCGAAAAGGTGATCAGCCTG
CACACGGGACAAAGGGCAGACAGGGATCATTTTATCCGCCTGCTGGTAGAGAGCTACTACACGAACAATAAAGTAGAGTT
CGAGAGCGGCAACTTCCGTGTCAAAGGCGACAGCGTGGACATATTCCCCGCCGTAGAAGGTTATGACGGCGTGGCATACA
GGGTGGAGTTTTGGGATGGAGAGGTCGAGCGGCTGAGTACCTTCGATCCGCGAACGGGACGGGAATACGGCCTGCTGTCG
GAGCTGAAGATATATCCGGCCAATCTCTTCGTGACAACTAAGGAGCAGGTGGATCGGGCAGTGGGGAAAATCGATGTGGA
TCTGGGCGCACAGGTCGATTTTCTGAAAGAGATCGGCAAACCATACGAAGCCAAACGCTTGTATGAGCGAGTCACGTATG
ACTTGGAAATGATCCGTGAGTTGGGTTATTGTTCCGGTATAGAGAACTATTCGCGCTACTTCGACGGTCGTGACGCGGGC
GAACGTCCTTTCTGTCTGTTGGATTATTTCCCGGAGGATTTCCTGTTAGTCATAGACGAAAGCCATGTAACGATACCGCA
GATACGTGCCATGTACGGAGGCGATCGTTCGCGCAAGGAGAATCTGGTCGAATACGGATTCCGCCTGCCTGCCGCTCTCG
ACAATCGGCCGCTTCGCTTCGACGAGTTCGAAGCTCTCACCCCCCGGACCCTTTATATCAGTGCCACGCCTGCCGACTAT
GAGCTGAACAGAAGCGAAGGCGTGATCGTCGAACAGCTGATCCGTCCGACCGGACTGCTGGATCCCATCATCGACGTCAA
GCCGACGGCAAACCAAGTGGACGATCTGATGGAGGAGATAGCACGCTGCATCGAAAAGAAAGAGCGCGTACTGGTAACGA
CCCTGACCAAACGTATGGCAGAGGAGCTTAGCGAATACCTGCTGCGCCACGGTATCAGCACCGGCTACATACACAGCGAT
GTGGACACGCTGGAGCGTGTGCGTATCATGGAAGACCTGCGCAAGGGGGTCTACGATGCACTCATCGGGGTGAATCTGCT
CCGCGAAGGATTGGACTTGCCGGAAGTTTCGCTTGTGGCTATTCTGGATGCGGATAAGGAAGGATTCCTGCGCTCGCATC
GTTCGCTCACGCAGACTGCAGGACGTGCCGCCCGGCACATTCATGGGCGTGTCATCTTCTACGCGGACAAGATCACCGAC
AGTATGCAGCTCACCATGGACGAGACTGCACGCCGGCGCGCAAAGCAACTGGCCTATAACGAAGCACACGGCATCACCCC
CCAACAGATAGTGAAGAACAGTGCTGCCATTTGGGGAGAAGGCGATGTGTCGGCCTTGCAATCCGGTACAGAATCCGGTG
CGTACATAGAAGAGAGCAGCATGGTGGCTGCCGATCCTTTGGCCGACTATCTGAGCAAACCCAAGCTGGAAGCACTCATT
GCTTCGACCAAGAAGCAAATGCTGGCAGCAGCCAAAGAGCTGGACTTTCTGGAAGCGGCACGACTTCGGGACGAAGCCGC
ACGATTGGAAAAGAAACTGGAGCAACTCACAGCCTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(638-671)

Type III restriction enzyme, res subunit (ResIII)

(9-84)

UvrB interaction domain (UvrB_inter)

(158-250)

Helicase conserved C-terminal domain (Helicase_C)

(438-545)

Ultra-violet resistance protein B (UvrB)

(553-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

54.381

97.64

0.531
  uvrB Streptococcus pneumoniae R6

54.23

97.64

0.53
  uvrB Streptococcus pneumoniae D39

54.23

97.64

0.53