Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   CS546_RS03315 Genome accession   NZ_CP024593
Coordinates   731401..733497 (-) Length   698 a.a.
NCBI ID   WP_099811718.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain KCOM 2804     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 726401..738497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS546_RS11785 - 726823..726915 (-) 93 WP_230493959.1 DUF1661 domain-containing protein -
  CS546_RS03290 (CS546_03270) - 726884..727012 (+) 129 WP_230491671.1 DUF1661 domain-containing protein -
  CS546_RS03295 (CS546_03275) - 727077..728639 (-) 1563 WP_394798149.1 exo-alpha-sialidase -
  CS546_RS03305 (CS546_03285) - 729082..730536 (+) 1455 WP_005873799.1 leucine-rich repeat domain-containing protein -
  CS546_RS03310 (CS546_03290) - 730631..731401 (-) 771 WP_005873802.1 HAD family phosphatase -
  CS546_RS03315 (CS546_03295) recG/mmsA 731401..733497 (-) 2097 WP_099811718.1 ATP-dependent DNA helicase RecG Machinery gene
  CS546_RS03320 (CS546_03300) galE 733540..734568 (-) 1029 WP_099811719.1 UDP-glucose 4-epimerase GalE -
  CS546_RS03325 (CS546_03305) yihA 734578..735183 (-) 606 WP_077083539.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  CS546_RS03330 (CS546_03310) - 735284..735877 (+) 594 WP_004584828.1 hypothetical protein -
  CS546_RS03335 (CS546_03315) - 735880..737349 (+) 1470 WP_099811720.1 metallophosphoesterase family protein -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 78998.10 Da        Isoelectric Point: 8.6433

>NTDB_id=213243 CS546_RS03315 WP_099811718.1 731401..733497(-) (recG/mmsA) [Porphyromonas gingivalis strain KCOM 2804]
MDILSTKITYLTGVGPKRAEVLKEEIEVRTYLDLLHYFPFRYVDRSRFYAIREIRSDMPYIQLRGVLRNFSEVGEGRRKR
LTATFSDGTGSIELVWFKGIKYIRDKLQEGRRYIVFGKPVFFASGYNIAHPEIDAEEKAEQVAGGLTPIYHTTERMKSMG
LGSKQLQQLLYVLLNQVSATLTETLPPYILSSYGFVSYQEAIRQIHFPQGVAQLEAARTRLKFEELFYVQLHLIGSKLER
KARFQGIVFAQVGALFNTFYKEHLLFELTGAQKRVVREIRQDTLSGHQMNRLVQGDVGSGKTLVALLSMLLALDNGCQAC
LMAPTEILARQHHHTLSELLRPLGIEVGLLIGSCTARQRERLLPRLADGSLSIVVGTHALLEQGVAFRRLGMAVIDEQHR
FGVQQRARLWEKNLDTLPHILIMSATPIPRTLAMTLYGDLDISIIDELPPGRKPIQTLHHFDNDMAPVFRFLRSQLAAGR
QVYVVYPMIEGSETTDLKNLEDGFELFSSIFPDEGVTMVHGKMKAKEKEARMADFVSGRSRILLATTVIEVGVNVPNATV
MVVENADRFGLSQLHQLRGRVGRGGEQSYCILITGTKTGEDSRRRIQVMVETNDGFEIAEEDMRLRGFGDLEGTRQSGRQ
ISLRIANPARDTELIALSRSIAEQLLERDPELRHPDNQMLALRLNKLFPKEEDWSVIS

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=213243 CS546_RS03315 WP_099811718.1 731401..733497(-) (recG/mmsA) [Porphyromonas gingivalis strain KCOM 2804]
ATGGATATCCTATCGACCAAAATCACTTACCTGACCGGCGTAGGGCCGAAGCGGGCGGAAGTACTGAAGGAGGAAATAGA
AGTACGTACCTATCTGGATCTTCTCCATTATTTCCCCTTTCGCTATGTCGATAGGAGTCGATTTTATGCCATACGGGAGA
TACGCTCCGATATGCCCTATATCCAGCTGCGCGGTGTCCTTCGCAACTTCTCCGAGGTGGGCGAAGGACGGCGCAAGCGG
CTGACGGCTACTTTCTCGGACGGTACGGGAAGCATAGAGCTGGTTTGGTTCAAGGGTATCAAGTACATACGCGACAAACT
GCAGGAAGGACGGCGATATATCGTTTTCGGCAAGCCTGTTTTCTTCGCTTCCGGCTATAACATAGCACATCCCGAAATAG
ATGCGGAGGAGAAGGCAGAGCAGGTAGCCGGCGGACTGACTCCGATTTATCACACCACAGAGCGCATGAAGAGTATGGGG
CTGGGCAGCAAACAGCTCCAGCAACTCCTGTACGTACTCCTCAATCAGGTATCAGCCACACTGACGGAGACACTGCCGCC
TTACATCCTTTCGTCTTATGGGTTCGTCTCCTATCAGGAGGCCATCAGACAGATTCATTTCCCTCAGGGGGTGGCACAGC
TGGAGGCTGCCCGTACAAGACTCAAGTTCGAAGAGCTGTTCTATGTGCAGCTGCATCTGATCGGCAGCAAGCTGGAGCGT
AAAGCGCGTTTTCAGGGAATTGTTTTTGCTCAAGTGGGAGCCTTATTCAATACATTCTACAAGGAACATCTGCTTTTCGA
ACTGACCGGTGCGCAGAAAAGGGTGGTACGGGAGATCCGGCAGGATACCCTCAGCGGACATCAAATGAACCGACTGGTGC
AGGGCGATGTGGGTAGCGGTAAAACTTTGGTAGCCTTGCTGTCCATGCTGTTGGCTCTGGACAATGGCTGTCAGGCTTGC
CTGATGGCTCCGACCGAAATTCTCGCCAGACAGCATCATCATACCCTGTCCGAGCTGTTGCGACCGCTTGGCATAGAAGT
CGGTTTGCTCATCGGAAGCTGTACCGCACGTCAGCGGGAACGCTTGCTTCCGCGTCTGGCCGATGGCTCGCTCTCCATCG
TCGTCGGTACGCATGCCCTATTGGAACAGGGAGTGGCCTTTCGTCGTTTGGGAATGGCAGTCATAGACGAGCAGCACCGA
TTCGGCGTACAGCAGCGAGCCCGCTTGTGGGAAAAGAACCTCGACACTCTGCCCCATATTCTGATTATGAGTGCCACCCC
CATACCTCGTACATTGGCCATGACGTTGTACGGCGATCTGGATATTTCCATCATCGACGAATTGCCTCCCGGCCGTAAGC
CCATACAGACGCTCCACCACTTCGACAACGATATGGCTCCGGTCTTTCGTTTCCTGCGATCTCAGCTTGCTGCAGGCCGG
CAGGTGTATGTGGTGTATCCGATGATCGAGGGGTCGGAGACGACCGATCTGAAGAATCTTGAAGATGGCTTCGAGCTGTT
CTCTTCCATTTTCCCCGATGAGGGCGTGACGATGGTGCACGGCAAGATGAAAGCCAAGGAAAAGGAGGCACGTATGGCGG
ACTTCGTCAGCGGTCGCTCCCGTATCTTGTTGGCTACGACGGTTATCGAAGTCGGAGTGAATGTCCCCAATGCTACGGTG
ATGGTAGTGGAGAATGCCGATCGTTTCGGCCTGTCGCAGCTACACCAGCTTAGAGGACGTGTAGGCCGCGGAGGAGAGCA
AAGCTATTGCATCCTGATCACGGGAACGAAAACAGGAGAGGATTCGCGTCGGCGTATTCAGGTGATGGTGGAGACGAACG
ATGGATTCGAAATAGCAGAGGAAGATATGCGCCTTCGTGGTTTCGGCGACTTGGAGGGTACGCGCCAGAGCGGTCGTCAG
ATCAGCCTTCGGATAGCCAATCCCGCACGAGATACGGAGCTGATAGCTCTTTCCCGAAGTATAGCGGAGCAACTACTGGA
GCGCGACCCCGAACTTCGCCATCCCGACAATCAAATGCTGGCTCTTCGTCTGAACAAACTTTTCCCCAAGGAGGAAGACT
GGAGTGTCATAAGCTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(477-585)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(612-698)

DEAD/DEAH box helicase (DEAD)

(272-431)

RecG wedge domain (RecG_wedge)

(8-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

40.675

97.564

0.397
  recG/mmsA Streptococcus pneumoniae R36A

40.675

97.564

0.397
  recG Neisseria meningitidis strain C311

41.578

94.413

0.393
  recG Bacillus subtilis subsp. subtilis str. 168

38.563

97.708

0.377

Multiple sequence alignment