Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   PA5042 Genome accession   NC_002516
Coordinates   5678433..5679056 (-) Length   207 a.a.
NCBI ID   NP_253729.1    Uniprot ID   G3XD51
Organism   Pseudomonas aeruginosa PAO1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5673433..5684056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA5038 aroB 5674028..5675134 (-) 1107 NP_253725.1 3-dehydroquinate synthase -
  PA5039 aroK 5675184..5675702 (-) 519 NP_253726.1 shikimate kinase -
  PA5040 pilQ 5675714..5677858 (-) 2145 NP_253727.1 type 4 fimbrial biogenesis outer membrane protein PilQ Machinery gene
  PA5041 comL/pilP 5677912..5678436 (-) 525 NP_253728.1 type 4 fimbrial biogenesis protein PilP Machinery gene
  PA5042 pilO 5678433..5679056 (-) 624 NP_253729.1 type 4 fimbrial biogenesis protein PilO Machinery gene
  PA5043 pilN 5679053..5679649 (-) 597 NP_253730.1 type 4 fimbrial biogenesis protein PilN Machinery gene
  PA5044 pilM 5679649..5680713 (-) 1065 NP_253731.1 type 4 fimbrial biogenesis protein PilM Machinery gene
  PA5045 ponA 5680898..5683366 (+) 2469 NP_253732.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22819.26 Da        Isoelectric Point: 4.7787

>NTDB_id=21314 PA5042 NP_253729.1 5678433..5679056(-) (pilO) [Pseudomonas aeruginosa PAO1]
MSLASSLESLRKIDINDLDLNNIGSWPAAVKVIVCVLLTAAVLALGYNFHLSDMQAQLEQQAAEEETLKQQFSTKAFQAA
NLEAYKAQMKEMEESFGALLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVAQQFYIELPIQISVVGGYHDLATF
VSGVSSLPRIVTLHDFEIKPVAPGSTSKLRMSILAKTYRYNDKGLKK

Nucleotide


Download         Length: 624 bp        

>NTDB_id=21314 PA5042 NP_253729.1 5678433..5679056(-) (pilO) [Pseudomonas aeruginosa PAO1]
ATGAGTCTGGCCAGTTCCCTGGAAAGTCTGCGCAAGATCGATATCAACGATCTCGACCTGAACAACATCGGTTCCTGGCC
GGCGGCGGTCAAGGTCATCGTCTGCGTGCTGCTGACCGCGGCGGTCCTGGCGCTGGGCTACAACTTCCATCTGAGTGACA
TGCAGGCTCAGCTCGAACAGCAGGCCGCGGAAGAGGAGACGCTCAAGCAGCAGTTCTCCACCAAGGCCTTCCAGGCCGCG
AACCTGGAAGCCTACAAGGCACAGATGAAGGAGATGGAAGAGTCCTTTGGCGCCTTGCTGCGGCAGTTGCCCAGCGACAC
CGAGGTACCCGGGCTGCTCGAGGACATCACTCGTACCGGCCTGGGCAGCGGCCTGGAGTTCGAGGAAATCAAGCTGCTTC
CCGAGGTTGCCCAGCAGTTCTACATCGAGCTGCCGATCCAGATCAGCGTGGTCGGCGGCTACCACGACTTGGCGACCTTC
GTCAGCGGCGTGTCCAGCCTGCCGCGGATCGTCACCCTGCATGACTTCGAGATCAAGCCGGTCGCGCCCGGCAGCACGTC
CAAGCTGCGCATGAGCATCCTGGCCAAGACCTATCGCTACAACGACAAGGGGCTGAAGAAATGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(58-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G3XD51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Legionella pneumophila strain ERS1305867

46.114

93.237

0.43
  pilO Acinetobacter baumannii D1279779

43.979

92.271

0.406
  comO/pilO Acinetobacter baylyi ADP1

43.455

92.271

0.401

Multiple sequence alignment