Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   CS058_RS30210 Genome accession   NZ_CP024477
Coordinates   6329515..6331590 (+) Length   691 a.a.
NCBI ID   WP_034026653.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 12939     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6324515..6336590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS058_RS30180 - 6324937..6325317 (+) 381 WP_003096609.1 RidA family protein -
  CS058_RS30185 - 6325372..6326103 (+) 732 WP_034026655.1 hypothetical protein -
  CS058_RS30190 - 6326110..6326730 (-) 621 WP_034026654.1 LysE family translocator -
  CS058_RS30195 - 6326797..6327597 (-) 801 WP_003096615.1 AraC family transcriptional regulator -
  CS058_RS30200 - 6327597..6328448 (-) 852 WP_003096618.1 SDR family oxidoreductase -
  CS058_RS30205 oxyR 6328586..6329518 (+) 933 WP_003096622.1 oxidative stress transcriptional regulator OxyR -
  CS058_RS30210 recG 6329515..6331590 (+) 2076 WP_034026653.1 ATP-dependent DNA helicase RecG Machinery gene
  CS058_RS30215 - 6331680..6333079 (+) 1400 Protein_5866 aminoacyl-tRNA deacylase and HDOD domain-containing protein -
  CS058_RS30220 - 6333151..6333543 (-) 393 WP_023127079.1 hypothetical protein -
  CS058_RS30225 - 6333679..6333951 (-) 273 WP_003096630.1 HU family DNA-binding protein -
  CS058_RS30235 alkT 6334153..6335307 (-) 1155 WP_003098326.1 rubredoxin-NAD(+) reductase AlkT -
  CS058_RS30240 - 6335359..6335526 (-) 168 WP_003098329.1 rubredoxin -
  CS058_RS30245 - 6335710..6335877 (-) 168 WP_003098330.1 rubredoxin -
  CS058_RS30250 - 6336011..6336412 (-) 402 WP_003096637.1 heme-binding protein -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 76150.82 Da        Isoelectric Point: 7.2591

>NTDB_id=213004 CS058_RS30210 WP_034026653.1 6329515..6331590(+) (recG) [Pseudomonas aeruginosa strain 12939]
MTELSRVPVTALKGVGAALAEKLARVGLETLQDILFHLPLRYQDRTRVTAIGALRPGADAVVEGVVAGADVVMGRRRSLL
VRLQDGSGTLSLRFYHFSQAQKDGLKRGTHLRCYGEVRPGASGLEIYHPEYRALNGDEPIPVEQTLTPIYPTTEGLTQQR
LRQLSQQALAMLGPSSLPDWLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAEGRHWAQLRLAFEELLTHQLSLQRLR
EAVRSQAAPRLPAASRLPKRFLANLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDVGAGKTVVAALAALQAIEAGYQA
ALMAPTEILAEQHFLNFSKWLQPLDIEVAWLAGKLKGKARAAALERIGDGAPMVVGTHALFQDEVKFKRLALAIIDEQHR
FGVQQRLALRQKGVDGRLCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIERVRAACRE
GRQAYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAFKEGMLQLLVATTVIEVGVDVPNA
SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPPLSQIGRERLGIMRETSDGFVIAEKDLELRGPGEMLGTRQTG
LLQFKVADLMRDADLLPAVRDAAQSLLAHWPQHVSPLLERWLRHGQQYGQV

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=213004 CS058_RS30210 WP_034026653.1 6329515..6331590(+) (recG) [Pseudomonas aeruginosa strain 12939]
ATGACCGAGCTGTCCAGGGTCCCGGTCACCGCGCTAAAGGGCGTAGGCGCCGCGCTGGCGGAGAAGCTCGCTCGGGTAGG
CCTGGAAACCCTGCAGGACATCCTGTTCCACCTGCCCCTGCGCTACCAGGACCGTACCCGCGTCACCGCCATCGGCGCCC
TGCGGCCAGGGGCCGACGCGGTGGTCGAGGGCGTGGTGGCCGGCGCCGACGTGGTGATGGGGCGCCGCCGCAGCCTGCTG
GTGCGCCTGCAGGACGGCAGCGGCACCCTGAGCCTGCGCTTCTACCATTTCAGCCAGGCGCAGAAGGACGGCCTCAAGCG
CGGCACCCACCTGCGCTGCTACGGCGAAGTCCGGCCGGGCGCCTCGGGCCTGGAGATCTACCATCCGGAATACCGCGCGC
TGAACGGCGACGAGCCGATTCCGGTGGAGCAGACCCTGACGCCGATCTACCCGACTACCGAGGGCCTCACCCAGCAGCGC
CTGCGCCAGTTGAGCCAACAGGCCCTGGCCATGCTCGGCCCCAGCAGCCTGCCCGACTGGCTGCCGGCGGAACTGGCCCG
CGATTACCAACTTGGCCCGCTCGACCAGGCGATCCGCTACCTGCACCGGCCGCCGCCGGATGCTGACATCGAGGAACTGG
CCGAAGGCCGGCACTGGGCGCAGTTGCGCCTGGCCTTCGAAGAACTGCTGACCCACCAGTTATCCCTGCAGCGCCTGCGC
GAAGCCGTGCGTTCGCAGGCAGCGCCGCGCTTGCCGGCGGCCAGCCGCTTGCCGAAACGCTTCCTTGCCAACCTCGGCTT
CCAGCCGACCGGCGCGCAACGCCGGGTCGGCGCGGAGATCGCCTACGACCTGGCCCAGGACGAACCGATGCTGCGCCTGG
TGCAAGGCGACGTCGGCGCCGGCAAGACCGTGGTCGCCGCCCTCGCCGCCCTGCAAGCCATAGAGGCCGGCTACCAGGCG
GCGCTGATGGCGCCGACCGAGATCCTCGCCGAGCAGCATTTCCTCAACTTCAGCAAGTGGCTCCAGCCGCTGGACATCGA
AGTCGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGGCCCGCGCGGCGGCACTGGAACGCATCGGCGACGGCGCGCCGATGG
TGGTCGGCACCCACGCGCTGTTCCAGGATGAAGTGAAATTCAAGCGCCTTGCACTGGCGATCATCGACGAACAGCACCGC
TTCGGCGTGCAGCAGCGCCTAGCCCTGCGCCAGAAGGGCGTGGACGGCAGGCTCTGCCCGCACCAGTTGATCATGACCGC
CACGCCGATCCCGCGGACCCTGGCGATGAGCGCCTATGCCGACCTCGACACCTCGATCCTCGACGAGCTGCCGCCCGGGC
GTACCCCGGTGAATACCGTGCTGGTGGCCGACAGCCGCCGTATCGAGGTGATCGAGCGAGTCCGCGCGGCTTGCCGCGAA
GGGCGCCAGGCCTACTGGGTGTGTACCCTGATCGAAGAGTCCGAGGAGCTTACCTGCCAGGCCGCCGAGACCACCTACGA
AGAGCTTTCCTCGGCGCTGGGCGAACTGCGTGTCGGCCTGATCCACGGGCGCATGAAGCCGGCGGACAAGGCCGTGGTGA
TGGAGGCCTTCAAGGAAGGCATGTTGCAACTGCTGGTGGCGACCACGGTGATCGAGGTCGGCGTCGACGTGCCCAACGCC
AGCCTGATGATCATCGAGAACCCCGAGCGCCTTGGCCTGGCCCAACTGCACCAGCTACGCGGCCGGGTTGGCCGGGGCAG
CGCCGCCAGCCACTGCGTGCTGCTCTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGGCTGGGCATCATGCGCGAAA
CCAGCGACGGCTTCGTCATCGCCGAGAAGGACCTGGAATTGCGCGGCCCCGGCGAAATGCTCGGCACCCGCCAGACCGGC
CTGCTGCAGTTCAAGGTCGCCGACCTGATGCGCGACGCAGACCTGCTGCCGGCGGTCCGCGATGCCGCCCAATCCCTCCT
GGCGCACTGGCCGCAGCATGTCAGCCCGCTGCTCGAACGGTGGTTGCGCCACGGCCAGCAATACGGTCAAGTGTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(479-586)

DEAD/DEAH box helicase (DEAD)

(293-430)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-675)

RecG wedge domain (RecG_wedge)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.224

97.106

0.488
  recG/mmsA Streptococcus pneumoniae R6

41.018

96.671

0.397
  recG/mmsA Streptococcus pneumoniae R36A

41.018

96.671

0.397
  recG Bacillus subtilis subsp. subtilis str. 168

40.356

97.54

0.394

Multiple sequence alignment