Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   BVL33_RS15790 Genome accession   NZ_CP019041
Coordinates   3281432..3282292 (+) Length   286 a.a.
NCBI ID   WP_005403573.1    Uniprot ID   A0AAW5R9T7
Organism   Acinetobacter junii strain 65     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3276432..3287292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVL33_RS15770 (BVL33_15770) secG 3276978..3277307 (-) 330 WP_004916847.1 preprotein translocase subunit SecG -
  BVL33_RS15775 (BVL33_15775) tpiA 3277320..3278111 (-) 792 WP_004958617.1 triose-phosphate isomerase -
  BVL33_RS15780 (BVL33_15780) pilB 3278457..3280181 (+) 1725 WP_075696849.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BVL33_RS15785 (BVL33_15785) pilC 3280206..3281432 (+) 1227 WP_075696850.1 type II secretion system F family protein Machinery gene
  BVL33_RS15790 (BVL33_15790) pilD 3281432..3282292 (+) 861 WP_005403573.1 prepilin peptidase Machinery gene
  BVL33_RS15795 (BVL33_15795) coaE 3282294..3282893 (+) 600 WP_004958609.1 dephospho-CoA kinase -
  BVL33_RS15800 (BVL33_15800) - 3282890..3283801 (-) 912 WP_004958607.1 DMT family transporter -
  BVL33_RS15805 (BVL33_15805) rlmB 3283832..3284581 (-) 750 WP_004916859.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  BVL33_RS15810 (BVL33_15810) - 3284771..3285097 (-) 327 WP_004958605.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32030.62 Da        Isoelectric Point: 7.5082

>NTDB_id=212827 BVL33_RS15790 WP_005403573.1 3281432..3282292(+) (pilD) [Acinetobacter junii strain 65]
MQSFFLYFLENPTALYLAVGLISLCIGSFLNVVIFRTPKMMEQEWHQECQMLLHHEQPIIDQSKLTLSQPVSTCPKCQTP
IKWFQNIPLISWLALRGKCGTCQNPISIRYPLIELLTMICSLIVVAVFGATIQMLFGLILTWTLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFAIYTTASAAIWGFLIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSM
VGAIIGIMLMKMRGENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=212827 BVL33_RS15790 WP_005403573.1 3281432..3282292(+) (pilD) [Acinetobacter junii strain 65]
ATGCAATCTTTTTTCCTTTACTTTTTAGAAAATCCAACTGCACTTTACCTTGCAGTTGGATTAATCAGTCTGTGCATCGG
AAGTTTTTTAAATGTTGTGATCTTTCGCACTCCAAAAATGATGGAGCAAGAATGGCATCAAGAATGCCAAATGCTTTTAC
ACCATGAACAGCCGATCATAGATCAGAGCAAGTTAACATTAAGTCAGCCAGTTTCTACCTGCCCTAAGTGTCAAACGCCA
ATTAAATGGTTCCAAAACATCCCTCTTATTAGTTGGTTAGCGCTACGAGGTAAATGTGGCACTTGCCAAAACCCAATTAG
CATTCGCTACCCGCTGATTGAACTACTTACTATGATCTGCTCATTGATCGTTGTGGCGGTATTCGGTGCAACAATTCAGA
TGCTGTTCGGCTTAATTCTAACTTGGACACTGATTGCACTCACTTTTATTGATTTTGATACACAATTACTACCTGATCGA
TTTACGCTACCTTTAGCAGCATTAGGTCTGGGTATTAATACTTTTGCAATCTATACAACGGCTAGTGCTGCGATCTGGGG
CTTTTTAATCGGTTTTCTATGTCTTTGGATTGTGTATTACCTATTTAAAATCATCACCGGCAAAGAAGGCATGGGCTATG
GAGATTTTAAACTGCTTGCCGCCCTTGGTGCATGGATGGGTCCGATGATGTTACCCCTCATCGTATTACTCTCTTCTATG
GTAGGTGCAATTATTGGTATTATGCTGATGAAAATGCGCGGTGAAAATCAACCTTTTGCATTTGGTCCTTATATTGCAAT
TGCTGGTTGGATTGCCTTTCTATGGGGTGAGCAAATTATGAAAGTGTATCTTGGGGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

81.119

100

0.811
  pilD Acinetobacter baumannii D1279779

80.769

100

0.808
  pilD Vibrio cholerae strain A1552

51.22

100

0.514
  pilD Vibrio campbellii strain DS40M4

51.504

93.007

0.479
  pilD Neisseria gonorrhoeae MS11

46.154

95.455

0.441

Multiple sequence alignment