Detailed information NTG0212699

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: BVG12_RS16235
• Genome accession: NZ_CP019038
• Coordinates: 3166535..3167965 (-)
• Length: 476 a.a.
• NCBI ID: WP_075793308.1
• Uniprot ID: -
• Organism: Massilia putida strain 6NM-7
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3161535..3172965

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BVG12_RS16225	-	3162007..3163107 (-)	1101	WP_075793306.1	ribonucleotide-diphosphate reductase subunit beta	-
BVG12_RS16230	-	3163192..3166104 (-)	2913	WP_075793307.1	ribonucleoside-diphosphate reductase subunit alpha	-
BVG12_RS16235	pilR	3166535..3167965 (-)	1431	WP_075793308.1	sigma-54 dependent transcriptional regulator	Regulator
BVG12_RS16240	-	3167984..3169663 (-)	1680	WP_370662839.1	PAS domain-containing sensor histidine kinase	-
BVG12_RS16245	-	3169684..3169971 (-)	288	WP_075793310.1	PP0621 family protein	-
BVG12_RS16250	-	3169968..3170771 (-)	804	WP_075793311.1	inner membrane protein YpjD	-
BVG12_RS16255	-	3170939..3171733 (-)	795	WP_075793312.1	ABC transporter ATP-binding protein	-
BVG12_RS16260	-	3171735..3172568 (-)	834	WP_075793313.1	ABC transporter permease	-

Sequence

Protein

• Length: 476 a.a.
• Molecular weight: 50714.33 Da
• Isoelectric Point: 4.9605

>NTDB_id=212699 BVG12_RS16235 WP_075793308.1 3166535..3167965(-) (pilR) [Massilia putida strain 6NM-7]
MSSPRILVVDDEPDLRELLEITLLKMGLDVDSAATVREARALLGQKPYALVLTDMRLPDGLGLELVREVAANHKCTPIAV
ITAYGSAENAVVALKAGAFDYVSKPVVLDDLRAMVRAALKLSDPAAAPASANADGTSRLIGQSPAMQALRAQIARLARSQ
APIAINGESGSGKELAAREIHAQGARAGKPFVAVNCGAIPEALMEAEFFGYRKGAFTGANDERDGFFQAANGGTLMLDEV
ADLPLAMQVKLLRAIQERRVRKIGATVEEPVDVRIISATHKDLAKCVENGSFRQDLFYRLNVIELTLPPLRERLDDLPLL
VDAILARLAGPGGARLGPGVLEALRGYAFPGNVRELENVLERALAFADDGVIEVGDLLLKGAKLGDAAVVPVADVQAQAP
APAPSATEPAAPPPSLADDALPSNLPDYLSQVERDIILRALNQTQFNRTQAASLLGISVRQLRYQMQKLDIHAPEP

Nucleotide

• Length: 1431 bp

>NTDB_id=212699 BVG12_RS16235 WP_075793308.1 3166535..3167965(-) (pilR) [Massilia putida strain 6NM-7]
ATGAGCTCACCCCGCATCCTGGTGGTCGACGACGAACCCGACCTGCGCGAGCTGCTCGAGATCACCCTGCTCAAGATGGG
GCTCGACGTGGACAGCGCGGCGACCGTGCGCGAAGCGCGCGCGCTGCTCGGCCAGAAACCGTATGCGCTGGTGCTGACGG
ACATGCGCCTGCCCGACGGCCTGGGGCTGGAACTCGTGCGCGAGGTGGCGGCCAATCATAAATGCACGCCCATCGCCGTG
ATCACCGCGTACGGCAGCGCCGAGAATGCGGTCGTGGCGCTCAAGGCCGGCGCGTTCGATTACGTGTCGAAGCCCGTCGT
GCTGGACGACCTGCGCGCGATGGTGCGCGCCGCGCTGAAATTGTCCGACCCGGCGGCTGCTCCCGCGAGCGCCAATGCGG
ACGGGACGTCGCGCCTGATCGGGCAATCGCCCGCGATGCAGGCGCTGCGCGCCCAGATCGCGCGGCTGGCGCGCTCGCAG
GCGCCCATCGCGATCAACGGCGAATCGGGCAGCGGCAAGGAACTGGCCGCGCGCGAGATCCACGCGCAGGGCGCGCGCGC
CGGCAAGCCGTTCGTCGCCGTCAACTGCGGCGCGATTCCCGAGGCGTTGATGGAGGCGGAGTTCTTCGGCTACCGCAAGG
GCGCGTTCACGGGCGCGAACGACGAGCGCGACGGCTTCTTCCAGGCCGCCAACGGGGGCACCCTGATGCTCGACGAAGTG
GCCGACCTGCCGCTCGCGATGCAGGTGAAACTGCTGCGCGCGATCCAGGAGCGGCGCGTGCGCAAGATCGGCGCCACCGT
CGAGGAACCGGTCGACGTGCGCATCATCAGCGCCACGCACAAGGACCTCGCCAAATGCGTGGAGAACGGCAGCTTCCGCC
AGGACCTGTTCTACCGCCTGAACGTCATCGAACTCACGCTGCCGCCGCTGCGCGAGCGCCTGGACGATCTGCCGCTCCTG
GTCGACGCCATCCTCGCGCGCCTGGCCGGCCCCGGCGGCGCGCGCCTCGGTCCCGGCGTGCTCGAGGCGCTGCGCGGCTA
TGCCTTTCCGGGCAATGTGCGCGAGCTGGAAAACGTGCTGGAGCGGGCGCTCGCCTTCGCCGACGATGGCGTGATCGAGG
TGGGCGATCTGCTGCTGAAAGGGGCGAAGCTGGGCGATGCGGCCGTCGTGCCGGTTGCCGATGTCCAGGCTCAGGCCCCG
GCCCCGGCGCCCTCGGCGACGGAGCCGGCCGCGCCGCCCCCGTCGCTCGCCGACGACGCGCTGCCGAGCAATCTGCCGGA
CTACCTGAGCCAGGTCGAGCGCGACATCATCCTGCGCGCGCTGAACCAAACCCAGTTCAACCGCACGCAGGCCGCCAGCC
TGCTCGGCATCAGCGTGCGCCAGCTCCGTTACCAGATGCAGAAACTGGACATTCATGCGCCCGAACCCTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (6-115)

• Sigma-54 interaction domain (Sigma54_activat) (139-305)

• Bacterial regulatory protein, Fis family (HTH_8) (429-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	56.118	99.58	0.559
pilR	Acinetobacter baumannii strain A118	44.842	99.79	0.447