Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AT570_RS10335 Genome accession   NZ_CP019034
Coordinates   2177430..2177840 (+) Length   136 a.a.
NCBI ID   WP_001200147.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB042     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2172430..2182840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT570_RS10320 (AT570_10315) - 2173419..2175725 (+) 2307 WP_000259109.1 RelA/SpoT family protein -
  AT570_RS10325 (AT570_10320) - 2175770..2176543 (-) 774 WP_000682838.1 SDR family oxidoreductase -
  AT570_RS10330 (AT570_10325) mazG 2176655..2177461 (+) 807 WP_000359488.1 nucleoside triphosphate pyrophosphohydrolase -
  AT570_RS10335 (AT570_10330) comEA 2177430..2177840 (+) 411 WP_001200147.1 ComEA family DNA-binding protein Machinery gene
  AT570_RS10340 (AT570_10335) pcnB 2177965..2179428 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  AT570_RS10345 (AT570_10340) folK 2179425..2179907 (+) 483 WP_000219221.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  AT570_RS10350 (AT570_10345) panB 2179953..2180762 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  AT570_RS10355 (AT570_10350) panC 2180766..2181614 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  AT570_RS10360 (AT570_10355) rapZ 2181637..2182488 (+) 852 WP_000821671.1 RNase adapter RapZ -
  AT570_RS10365 (AT570_10360) - 2182485..2182754 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15690.99 Da        Isoelectric Point: 10.4475

>NTDB_id=212661 AT570_RS10335 WP_001200147.1 2177430..2177840(+) (comEA) [Acinetobacter baumannii strain AB042]
MQYSMRFWKNKYFVLIMLCLGGISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKFSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=212661 AT570_RS10335 WP_001200147.1 2177430..2177840(+) (comEA) [Acinetobacter baumannii strain AB042]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATGTTGTGCTTGGGGGGAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTTTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baumannii strain A118

94.853

100

0.949
  comEA Acinetobacter baylyi ADP1

44.444

92.647

0.412

Multiple sequence alignment