Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   A5960_RS00640 Genome accession   NZ_CP024289
Coordinates   113911..114648 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O178:H19 strain 2012C-4431     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 108911..119648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A5960_RS00610 yfiL 109069..109434 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  A5960_RS00615 aroF 109644..110714 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  A5960_RS00620 tyrA 110725..111846 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  A5960_RS00625 pheA 111889..113049 (-) 1161 WP_053276114.1 bifunctional chorismate mutase/prephenate dehydratase -
  A5960_RS27995 pheL 113148..113195 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  A5960_RS00630 raiA 113299..113640 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  A5960_RS00640 comL 113911..114648 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  A5960_RS00645 rluD 114783..115763 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A5960_RS00650 yfiH 115760..116491 (+) 732 WP_099528290.1 purine nucleoside phosphorylase YfiH -
  A5960_RS00655 clpC 116621..119194 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=212649 A5960_RS00640 WP_000197686.1 113911..114648(-) (comL) [Escherichia coli O178:H19 strain 2012C-4431]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=212649 A5960_RS00640 WP_000197686.1 113911..114648(-) (comL) [Escherichia coli O178:H19 strain 2012C-4431]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCGGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376