Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AT570_RS04840 Genome accession   NZ_CP019034
Coordinates   1036515..1037333 (-) Length   272 a.a.
NCBI ID   WP_000149378.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB042     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1031515..1042333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT570_RS04825 (AT570_04825) pilE 1031732..1032157 (-) 426 WP_000788346.1 type IV pilin protein Machinery gene
  AT570_RS04830 (AT570_04830) pilY2 1032154..1032636 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  AT570_RS04835 (AT570_04835) pilY1 1032649..1036503 (-) 3855 WP_000768958.1 PilC/PilY family type IV pilus protein Machinery gene
  AT570_RS04840 (AT570_04840) pilX 1036515..1037333 (-) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AT570_RS04845 (AT570_04845) pilW 1037330..1038331 (-) 1002 WP_000079196.1 PilW family protein Machinery gene
  AT570_RS04850 (AT570_04850) pilV 1038332..1038892 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AT570_RS04855 (AT570_04855) fimU 1038886..1039359 (-) 474 WP_001214058.1 pilus assembly FimT family protein Machinery gene
  AT570_RS04860 (AT570_04860) ispH 1039529..1040479 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AT570_RS04865 (AT570_04865) gmk 1040602..1041231 (+) 630 WP_000015937.1 guanylate kinase -
  AT570_RS04870 (AT570_04870) rpoZ 1041304..1041582 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AT570_RS19385 - 1041621..1041751 (+) 131 Protein_939 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28862.69 Da        Isoelectric Point: 5.6905

>NTDB_id=212636 AT570_RS04840 WP_000149378.1 1036515..1037333(-) (pilX) [Acinetobacter baumannii strain AB042]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMTDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=212636 AT570_RS04840 WP_000149378.1 1036515..1037333(-) (pilX) [Acinetobacter baumannii strain AB042]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGACTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment