Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CS031_RS24150 Genome accession   NZ_CP024278
Coordinates   4637767..4638435 (+) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli strain ATCC 43896     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4632767..4643435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS031_RS24115 yicC 4632786..4633649 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  CS031_RS24125 rph 4633776..4634492 (+) 717 WP_001247093.1 ribonuclease PH -
  CS031_RS24130 pyrE 4634558..4635199 (+) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  CS031_RS24135 slmA 4635236..4635832 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CS031_RS24140 dut 4635939..4636397 (-) 459 WP_000976070.1 dUTP diphosphatase -
  CS031_RS24145 coaBC 4636375..4637595 (-) 1221 WP_000050155.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CS031_RS24150 radC 4637767..4638435 (+) 669 WP_001298959.1 DNA repair protein RadC Machinery gene
  CS031_RS24155 rpmB 4638652..4638888 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  CS031_RS24160 rpmG 4638909..4639076 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  CS031_RS24165 mutM 4639174..4639983 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CS031_RS24170 coaD 4640022..4640501 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  CS031_RS24175 waaA 4640509..4641786 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CS031_RS24180 rfaQ 4642199..4643257 (+) 1059 WP_000360412.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=212635 CS031_RS24150 WP_001298959.1 4637767..4638435(+) (radC) [Escherichia coli strain ATCC 43896]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=212635 CS031_RS24150 WP_001298959.1 4637767..4638435(+) (radC) [Escherichia coli strain ATCC 43896]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment