Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   PA0652 Genome accession   NC_002516
Coordinates   706028..706672 (-) Length   214 a.a.
NCBI ID   NP_249343.1    Uniprot ID   P55222
Organism   Pseudomonas aeruginosa PAO1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 701028..711672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA0645 - 701151..701381 (+) 231 NP_249336.1 hypothetical protein -
  PA0646 - 701477..702529 (+) 1053 NP_249337.1 hypothetical protein -
  PA0647 - 702529..702831 (+) 303 NP_249338.1 hypothetical protein -
  PA0648 - 702828..703058 (+) 231 NP_249339.1 hypothetical protein -
  PA0649 trpG 703477..704082 (+) 606 NP_249340.1 anthranilate synthase component II -
  PA0650 trpD 704084..705133 (+) 1050 NP_249341.1 anthranilate phosphoribosyltransferase -
  PA0651 trpC 705130..705966 (+) 837 NP_249342.1 indole-3-glycerol phosphate synthase -
  PA0652 crp 706028..706672 (-) 645 NP_249343.1 cAMP-regulatory protein Regulator
  PA0653 - 706944..707366 (+) 423 NP_249344.1 hypothetical protein -
  PA0654 speD 707686..708480 (+) 795 NP_249345.1 S-adenosylmethionine decarboxylase -
  PA0655 - 708535..709182 (-) 648 NP_249346.1 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase -
  PA0656 - 709282..709620 (-) 339 NP_249347.1 HIT family protein -
  PA0657 - 709699..711180 (+) 1482 NP_249348.1 ATPase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24225.01 Da        Isoelectric Point: 8.0525

>NTDB_id=21247 PA0652 NP_249343.1 706028..706672(-) (crp) [Pseudomonas aeruginosa PAO1]
MVAITHTPKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEK
EGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLCQQPD
AMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=21247 PA0652 NP_249343.1 706028..706672(-) (crp) [Pseudomonas aeruginosa PAO1]
ATGGTAGCTATTACCCACACACCCAAACTCAAACACCTAGACAAGCTGCTCGCACACTGTCACCGCCGCCGCTACACCGC
AAAGAGCACCATCATCTATGCCGGCGATCGCTGCGAAACGCTGTTCTTCATCATCAAGGGTTCGGTCACCATCCTCATCG
AGGACGACGACGGCCGCGAAATGATCATCGGCTACCTCAACAGCGGTGATTTCTTCGGCGAGCTGGGATTGTTCGAAAAG
GAAGGCAGCGAACAGGAACGCAGCGCCTGGGTTCGTGCCAAGGTGGAATGCGAAGTCGCCGAGATCAGCTATGCGAAGTT
CCGCGAACTGTCGCAGCAGGACTCGGAGATCCTCTACACCCTCGGCAGCCAGATGGCCGACCGCCTGCGCAAGACCACCC
GCAAGGTGGGCGACCTGGCCTTCCTCGACGTCACCGGACGCGTCGCCCGCACCTTGCTGGACCTGTGCCAGCAACCGGAC
GCCATGACCCACCCGGACGGCATGCAGATCAAGATCACCCGCCAGGAGATCGGCCGGATCGTCGGCTGCTCGCGGGAAAT
GGTCGGACGCGTGCTGAAGAGCCTGGAGGAGCAGGGCCTGGTGCATGTGAAAGGAAAGACCATGGTGGTCTTCGGCACCC
GCTGA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(22-114)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(146-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2OZ6
  PDB 7FEW
  PDB 7FF0
  PDB 7FF8
  PDB 7FF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

67.327

94.393

0.636
  crp Haemophilus influenzae Rd KW20

60.396

94.393

0.57
  crp Acinetobacter baumannii D1279779

54.545

92.523

0.505

Multiple sequence alignment