Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CCV27_RS11715 Genome accession   NZ_CP024269
Coordinates   2265971..2266603 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain F8111-1SC3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2260971..2271603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCV27_RS11685 yheS 2261140..2263053 (+) 1914 WP_001613950.1 ABC transporter ATP-binding protein -
  CCV27_RS11690 yheT 2263053..2264075 (+) 1023 WP_000057392.1 hydrolase -
  CCV27_RS11695 yheU 2264069..2264287 (+) 219 WP_000907085.1 YheU family protein -
  CCV27_RS11700 prkB 2264341..2265210 (+) 870 WP_001274680.1 phosphoribulokinase -
  CCV27_RS11705 yhfA 2265265..2265669 (-) 405 WP_001148908.1 OsmC family protein -
  CCV27_RS11715 crp 2265971..2266603 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  CCV27_RS11720 yhfK 2266654..2268744 (+) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  CCV27_RS11725 argD 2268811..2270031 (-) 1221 WP_001718947.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  CCV27_RS11730 pabA 2270117..2270680 (-) 564 WP_001718948.1 aminodeoxychorismate synthase component 2 -
  CCV27_RS11735 fic 2270712..2271314 (-) 603 WP_001718949.1 putative adenosine monophosphate-protein transferase Fic -
  CCV27_RS11740 yhfG 2271304..2271471 (-) 168 WP_032201336.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=212358 CCV27_RS11715 WP_000242755.1 2265971..2266603(+) (crp) [Escherichia coli strain F8111-1SC3]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=212358 CCV27_RS11715 WP_000242755.1 2265971..2266603(+) (crp) [Escherichia coli strain F8111-1SC3]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTCAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTTGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467