Detailed information
Bioinformatically predicted
Overview
| Name | comL | Type | Machinery gene |
| Locus tag | VC_RS03560 | Genome accession | NC_002505 |
| Coordinates | 756971..757696 (-) | Length | 241 a.a. |
| NCBI ID | WP_000877198.1 | Uniprot ID | Q9KU21 |
| Organism | Vibrio cholerae O1 biovar El Tor str. N16961 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 751971..762696
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VC_RS03545 (VC0704) | - | 753606..754646 (-) | 1041 | WP_000595738.1 | polyamine ABC transporter substrate-binding protein | - |
| VC_RS03550 (VC0705) | pheA | 754828..756003 (-) | 1176 | WP_000130282.1 | prephenate dehydratase | - |
| VC_RS03555 (VC0706) | hpf | 756243..756569 (-) | 327 | WP_000700176.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| VC_RS03560 (VC0708) | comL | 756971..757696 (-) | 726 | WP_000877198.1 | outer membrane protein assembly factor BamD | Machinery gene |
| VC_RS03565 (VC0709) | rluD | 757851..758825 (+) | 975 | WP_000941107.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| VC_RS03570 (VC0710) | pgeF | 758828..759550 (+) | 723 | WP_000602844.1 | peptidoglycan editing factor PgeF | - |
| VC_RS03575 (VC0711) | clpC | 759675..762248 (+) | 2574 | WP_001235051.1 | ATP-dependent chaperone ClpB | Regulator |
Sequence
Protein
Download Length: 241 a.a. Molecular weight: 27875.68 Da Isoelectric Point: 5.1660
>NTDB_id=21179 VC_RS03560 WP_000877198.1 756971..757696(-) (comL) [Vibrio cholerae O1 biovar El Tor str. N16961]
MKYQTLSGLLALSLLFGCSSSPDVVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAED
AQRRMFALKNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQLNP
L
MKYQTLSGLLALSLLFGCSSSPDVVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAED
AQRRMFALKNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQLNP
L
Nucleotide
Download Length: 726 bp
>NTDB_id=21179 VC_RS03560 WP_000877198.1 756971..757696(-) (comL) [Vibrio cholerae O1 biovar El Tor str. N16961]
ATGAAATACCAGACTTTATCAGGCCTACTCGCGTTATCCCTGTTATTTGGTTGCTCTAGCAGCCCAGATGTGGTGCCAGA
TGTACCGCCATCACAGCTGTACTCTGAAGCGCAAACCGCTCTACAAAGCGGAACGTGGTTAACCGCTATCGAAAAACTAG
AGGCGCTCGATTCACGCTATCCATTTGGTGCTTATTCAGAGCAAGTACAGCTCGATCTGATTTATGCCTACTACAAAAAT
GATGATCTGGCCCTTGGCCTCGCGACCATCGAACGTTTTACACGCCTTAATCCAACCCATGAAAAAATGGATTGGGTACT
CTACATGCGCGGTTTGACGCACATGGCGCAAGATCGCAACTTCATGCATGACCTGTTTAATATCGATCGCCGTGACCGCG
ATCCTGAACCCGTGAAAGCAGCCTTTGCGGATTTTAAGAAACTGCTCCAGCGTTACCCAAACAGCCCATACGCAGAAGAT
GCGCAGCGTCGAATGTTTGCGCTCAAGAACCGTTTAGCGGAATACGATTTAGCGACCGCAGATTTCTACCTGCGCCGTGA
AGCATGGATTGCAGCGATTAATCGCACTCAAGAGTTACAAAAAACCTATCCAGATACCGAAGCGGCACGTAAATCCTTAG
AAATACAACTCGAGGCTTATCAGCAGCTTGGTTTAACCGACGCGATAGAGCGAACTAAGCAGTTAATGCAGCTTAACCCT
TTATAA
ATGAAATACCAGACTTTATCAGGCCTACTCGCGTTATCCCTGTTATTTGGTTGCTCTAGCAGCCCAGATGTGGTGCCAGA
TGTACCGCCATCACAGCTGTACTCTGAAGCGCAAACCGCTCTACAAAGCGGAACGTGGTTAACCGCTATCGAAAAACTAG
AGGCGCTCGATTCACGCTATCCATTTGGTGCTTATTCAGAGCAAGTACAGCTCGATCTGATTTATGCCTACTACAAAAAT
GATGATCTGGCCCTTGGCCTCGCGACCATCGAACGTTTTACACGCCTTAATCCAACCCATGAAAAAATGGATTGGGTACT
CTACATGCGCGGTTTGACGCACATGGCGCAAGATCGCAACTTCATGCATGACCTGTTTAATATCGATCGCCGTGACCGCG
ATCCTGAACCCGTGAAAGCAGCCTTTGCGGATTTTAAGAAACTGCTCCAGCGTTACCCAAACAGCCCATACGCAGAAGAT
GCGCAGCGTCGAATGTTTGCGCTCAAGAACCGTTTAGCGGAATACGATTTAGCGACCGCAGATTTCTACCTGCGCCGTGA
AGCATGGATTGCAGCGATTAATCGCACTCAAGAGTTACAAAAAACCTATCCAGATACCGAAGCGGCACGTAAATCCTTAG
AAATACAACTCGAGGCTTATCAGCAGCTTGGTTTAACCGACGCGATAGAGCGAACTAAGCAGTTAATGCAGCTTAACCCT
TTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comL | Neisseria meningitidis MC58 |
38.589 |
100 |
0.386 |
| comL | Neisseria gonorrhoeae MS11 |
37.759 |
100 |
0.378 |