Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NGO_RS11195 Genome accession   NC_002946
Coordinates   2044296..2044595 (-) Length   99 a.a.
NCBI ID   WP_232469547.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae FA 1090     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2039296..2049595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGO_RS10435 (NGO2065) lpxC 2039365..2040288 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NGO_RS10440 (NGO_11125) - 2040862..2041203 (-) 342 Protein_2051 pilin -
  NGO_RS11980 - 2041256..2041606 (-) 351 Protein_2052 pilin -
  NGO_RS11985 - 2041646..2042026 (-) 381 Protein_2053 pilin -
  NGO_RS11190 - 2042470..2042762 (-) 293 Protein_2054 pilin -
  NGO_RS10455 - 2042783..2043139 (-) 357 Protein_2055 pilin -
  NGO_RS10460 (NGO_11140) pilE 2043130..2043561 (-) 432 WP_157147418.1 pilin Machinery gene
  NGO_RS10465 (NGO_11150) - 2044001..2044357 (-) 357 Protein_2057 pilin -
  NGO_RS11195 pilE 2044296..2044595 (-) 300 WP_232469547.1 pilin Machinery gene
  NGO_RS11200 - 2044779..2045130 (-) 352 Protein_2059 pilin -
  NGO_RS11990 - 2045512..2045822 (-) 311 Protein_2060 pilin -
  NGO_RS10480 (NGO_11165) - 2045843..2046256 (-) 414 Protein_2061 pilin -
  NGO_RS10485 (NGO2068) - 2046714..2047403 (-) 690 WP_003705080.1 SprT family zinc-dependent metalloprotease -
  NGO_RS10490 (NGO2069) - 2047400..2048143 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -
  NGO_RS10495 (NGO2070) gmhB 2048173..2048736 (-) 564 WP_003705078.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11255.78 Da        Isoelectric Point: 10.1593

>NTDB_id=21180 NGO_RS11195 WP_232469547.1 2044296..2044595(-) (pilE) [Neisseria gonorrhoeae FA 1090]
MNPSGVNNEIKDKKLSLWAKRENGSVKWFCGQPVTRNDAKADAKDDTVTAIETKHLPSTCRDESSAGCIKTPRADFKHFQ
KISRCRVLPESRHMAERQR

Nucleotide


Download         Length: 300 bp        

>NTDB_id=21180 NGO_RS11195 WP_232469547.1 2044296..2044595(-) (pilE) [Neisseria gonorrhoeae FA 1090]
ATGAATCCAAGCGGCGTAAACAATGAAATCAAAGACAAAAAACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTACGCGCAACGACGCCAAAGCCGACGCCAAAGACGACACCGTCACCGCCATCGAAACCA
AGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCATAAAAACACCACGCGCCGATTTCAAACACTTCCAA
AAAATCAGCCGTTGCCGGGTATTGCCCGAATCACGGCACATGGCCGAAAGACAACGGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(4-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

73.134

67.677

0.495
  pilE Neisseria gonorrhoeae strain FA1090

71.212

66.667

0.475

Multiple sequence alignment