Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA/comEC   Type   Machinery gene
Locus tag   BVD86_RS19655 Genome accession   NZ_CP018909
Coordinates   4081657..4084089 (+) Length   810 a.a.
NCBI ID   WP_101664761.1    Uniprot ID   -
Organism   Acinetobacter pittii strain XJ88     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 4076657..4089089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVD86_RS19630 (BVD86_19650) - 4076809..4077750 (-) 942 WP_002118998.1 hypothetical protein -
  BVD86_RS19635 (BVD86_19655) - 4077996..4078484 (+) 489 WP_101665039.1 YaiI/YqxD family protein -
  BVD86_RS19640 (BVD86_19660) - 4078492..4079400 (+) 909 WP_063099457.1 DMT family transporter -
  BVD86_RS20140 - 4079430..4079531 (-) 102 Protein_3797 PilZ domain-containing protein -
  BVD86_RS19645 (BVD86_19665) lolC 4079660..4080895 (+) 1236 WP_004790618.1 lipoprotein-releasing ABC transporter permease subunit -
  BVD86_RS19650 (BVD86_19670) lolD 4080888..4081574 (+) 687 WP_032004412.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  BVD86_RS19655 (BVD86_19675) comA/comEC 4081657..4084089 (+) 2433 WP_101664761.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BVD86_RS19660 (BVD86_19680) - 4084042..4085025 (-) 984 WP_002118440.1 lysophospholipid acyltransferase family protein -
  BVD86_RS19665 (BVD86_19685) sppA 4085159..4086175 (+) 1017 WP_005067744.1 signal peptide peptidase SppA -
  BVD86_RS19670 (BVD86_19690) - 4086199..4086999 (+) 801 WP_002118584.1 alpha/beta fold hydrolase -
  BVD86_RS19675 (BVD86_19695) purN 4087075..4087704 (-) 630 WP_005073082.1 phosphoribosylglycinamide formyltransferase -
  BVD86_RS19680 (BVD86_19700) purM 4087701..4088771 (-) 1071 WP_017385817.1 phosphoribosylformylglycinamidine cyclo-ligase -

Sequence


Protein


Download         Length: 810 a.a.        Molecular weight: 92927.48 Da        Isoelectric Point: 8.9076

>NTDB_id=211786 BVD86_RS19655 WP_101664761.1 4081657..4084089(+) (comA/comEC) [Acinetobacter pittii strain XJ88]
MLKLILMGWIGGIAFMGIDIPLIMQYGWLGKVLLVMGFIFYIFKRNIFLNRPIFKTIYCLVCAISLFTIGHQYAQYALNE
RLELRQMQPKSLDIIVYVDRISEEKEDKIQQPVQVLGQSLHPVNWLLYLKNQKVISAIDEPKLQLGHYYRISGKTKPAHS
YAVAGVFDQEQWFIQRNIMSGFSVQHIEPLSSDEIYQLGYQHHLKEQQKFFNRQKLNVEKLRLTFRLMLKQSPLQNKGLL
LALLTGDESLLNDEIKNQFKELGISHLLAISGPHVLIFAIMLSWVLHQLIRRYYPQLYLRQPKQIWTMIPVCFGVLIYTA
FVGFEIPALRTLLSVFLFASLLLIKVPVKPFSLLVYSASLLLLFDPFSVLSAGFWLSYGSCFILLRIYQTIEQAPNLVST
SLLSRIILFSKILIESQGKIFIALCPLMLIFFQQISWVAPFTNIIAVPLLGGVIVPLNIFAACVWLIFKSFGNLLFQIND
VLISIVLSCFNLLEKLSLPLQGFSLTPLDLVCLSFVIIILFLPRGVLPKSWGLICCLPLIIPDKSSQQIQLNIIDVGQGQ
SIFLQHPQQTWLIDTGGSYDEKAFSIGQNVVIPYLRQKGIKQLDHVVLSHLDQDHSGAFPSIAQTFSIKQVISNELWKEQ
ITEPFTYCHQGQKWQYPQLDIEILWPKEKDLNLFSSNQNQYSCVIYIHLKQINGYQNYLIMGDAGLEAEYQLMKEYPDLK
VDVLVLGHHGSKHSSAYDFLATLNPKLVVASAGFNNRYGHPSKEVLARIQELNIPFKSTVEQGTLSFVSRNQEMVLYTRR
FERTWLHRNL

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=211786 BVD86_RS19655 WP_101664761.1 4081657..4084089(+) (comA/comEC) [Acinetobacter pittii strain XJ88]
ATGTTAAAACTTATTTTAATGGGGTGGATTGGGGGTATTGCATTTATGGGGATAGATATCCCTTTAATAATGCAATATGG
GTGGTTAGGTAAAGTCTTGCTTGTTATGGGCTTTATTTTTTATATTTTTAAGAGAAATATTTTCTTAAATCGCCCCATAT
TTAAAACCATTTACTGTCTAGTCTGTGCTATTAGTCTTTTTACTATAGGACATCAATATGCTCAGTATGCCTTAAATGAA
AGATTAGAACTGAGACAAATGCAGCCTAAATCTTTAGATATTATTGTGTATGTCGACCGTATAAGTGAAGAAAAAGAAGA
TAAAATACAACAACCCGTTCAGGTATTAGGGCAGTCCTTACATCCCGTCAATTGGCTATTATATTTAAAAAATCAAAAAG
TAATCTCAGCCATAGATGAGCCAAAATTACAATTAGGTCATTATTATCGAATTTCTGGCAAAACCAAACCTGCTCATAGT
TACGCAGTGGCTGGTGTTTTTGACCAAGAACAGTGGTTCATTCAACGAAATATAATGTCCGGTTTTAGTGTTCAGCATAT
TGAGCCTTTAAGCTCTGATGAAATTTATCAGTTGGGTTATCAACATCATTTAAAAGAGCAACAAAAATTCTTTAACAGAC
AAAAGTTAAATGTAGAAAAGTTGCGCCTAACATTTAGATTAATGTTAAAACAATCTCCTTTGCAAAATAAAGGTCTGTTA
TTAGCTTTGTTAACAGGGGACGAAAGTCTCTTAAATGATGAGATTAAAAATCAATTTAAGGAATTAGGAATCTCTCATTT
GTTAGCCATTTCAGGGCCTCATGTACTCATTTTTGCCATCATGTTGTCTTGGGTATTACATCAATTAATAAGACGTTATT
ATCCGCAGCTTTATTTGCGTCAACCTAAACAAATTTGGACCATGATTCCAGTATGTTTCGGTGTTTTGATTTATACGGCA
TTTGTTGGTTTTGAAATTCCCGCATTAAGAACTTTACTCTCAGTATTTTTATTTGCTTCTTTGTTATTGATTAAAGTGCC
TGTTAAGCCATTTTCACTCTTGGTTTATAGTGCAAGTCTACTTTTACTTTTCGATCCCTTCAGTGTTTTATCGGCAGGTT
TTTGGCTGTCTTATGGTTCTTGCTTTATTTTATTACGGATTTATCAAACTATAGAGCAGGCTCCAAATCTTGTTTCAACT
AGTCTGTTATCTAGAATCATTCTTTTCAGTAAAATTTTAATTGAATCTCAAGGCAAAATATTTATTGCCTTATGCCCCTT
AATGCTGATTTTCTTTCAACAGATTTCATGGGTTGCTCCTTTTACAAATATTATTGCAGTTCCTTTACTCGGAGGAGTGA
TTGTTCCTTTAAATATTTTTGCAGCTTGTGTGTGGCTTATTTTTAAATCATTCGGAAATTTACTTTTTCAAATTAATGAC
GTCCTGATTAGTATAGTACTGTCATGTTTTAATCTTTTAGAAAAGTTATCTCTACCATTACAAGGTTTTAGCCTCACACC
ACTTGACTTAGTGTGCCTTAGCTTCGTTATTATTATCTTATTTTTACCGCGTGGGGTTTTACCTAAATCTTGGGGGCTAA
TATGCTGTTTACCCTTGATCATTCCAGATAAGTCGTCCCAGCAAATTCAATTAAATATTATAGATGTAGGACAGGGGCAA
TCTATATTCTTACAGCACCCGCAGCAGACATGGTTAATTGATACGGGTGGTTCTTATGATGAGAAAGCTTTTAGTATTGG
TCAAAATGTGGTGATTCCATATTTACGCCAAAAGGGAATTAAACAACTGGATCACGTCGTACTATCTCATCTTGATCAAG
ATCATAGCGGAGCATTTCCTTCTATTGCTCAGACTTTTTCTATTAAACAAGTCATATCAAATGAATTATGGAAAGAGCAA
ATTACAGAACCATTTACTTATTGTCATCAAGGGCAAAAATGGCAATATCCACAATTAGATATTGAAATCCTTTGGCCTAA
AGAAAAAGATTTAAACTTATTTTCTTCAAATCAAAATCAATATTCTTGTGTGATTTATATTCATTTAAAACAGATAAATG
GCTATCAAAATTATTTAATCATGGGCGATGCAGGGTTGGAAGCAGAATATCAACTCATGAAAGAATATCCTGATTTAAAG
GTAGATGTTTTGGTATTAGGTCATCATGGAAGTAAACATAGTTCAGCTTACGACTTCTTAGCGACGTTAAACCCCAAGCT
TGTTGTTGCTTCTGCTGGCTTTAATAATCGTTATGGTCATCCAAGCAAAGAGGTTTTAGCGAGAATACAAGAACTTAATA
TTCCATTTAAAAGCACAGTTGAGCAAGGAACATTAAGCTTTGTATCTCGCAATCAAGAGATGGTTTTATACACTCGACGT
TTCGAGCGTACTTGGCTTCACAGGAATTTGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baumannii D1279779

69.839

99.877

0.698

  comA/comEC Acinetobacter baumannii strain A118

69.221

99.877

0.691

  comA/comEC Acinetobacter baylyi ADP1

49.077

100

0.493


Multiple sequence alignment