Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BVD86_RS13710 Genome accession   NZ_CP018909
Coordinates   2849163..2850575 (+) Length   470 a.a.
NCBI ID   WP_101664214.1    Uniprot ID   -
Organism   Acinetobacter pittii strain XJ88     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2844163..2855575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVD86_RS13690 (BVD86_13740) thrC 2844421..2845560 (+) 1140 WP_060466387.1 threonine synthase -
  BVD86_RS13695 (BVD86_13745) pbpG 2845666..2846712 (-) 1047 WP_128839933.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  BVD86_RS13700 (BVD86_13750) gacA 2846925..2847560 (+) 636 WP_002121174.1 response regulator -
  BVD86_RS13705 (BVD86_13755) pilS 2847571..2849139 (+) 1569 WP_199997689.1 sensor histidine kinase Regulator
  BVD86_RS13710 (BVD86_13760) pilR 2849163..2850575 (+) 1413 WP_101664214.1 sigma-54-dependent transcriptional regulator Regulator
  BVD86_RS13715 (BVD86_13765) ctpA 2850579..2851763 (-) 1185 WP_101664215.1 S41 family peptidase -
  BVD86_RS13720 (BVD86_13770) gpmI 2851779..2853326 (-) 1548 WP_005065710.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  BVD86_RS13725 (BVD86_13775) lptG 2853453..2854523 (-) 1071 WP_002121203.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52670.76 Da        Isoelectric Point: 6.3452

>NTDB_id=211762 BVD86_RS13710 WP_101664214.1 2849163..2850575(+) (pilR) [Acinetobacter pittii strain XJ88]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVQHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIMLPPLRDRGGDILL
LANHFIQKVCMEWGISSKQLTASAETYLLQQDFPGNVRELRNMIERAITLSDDESIDLTHLAPPLRGSSVSPQIVTKQLN
QTPTVQTHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=211762 BVD86_RS13710 WP_101664214.1 2849163..2850575(+) (pilR) [Acinetobacter pittii strain XJ88]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAGCTTTTTACTCAGTTTCATTACGATGCATGCT
TGACCGATTTAAACCTACCTGACGGTAGTGGTTTAGAATTGGTTCAACATGTTTCTCAAACTTACCCACACACTCCCATT
GCAGTCTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCGGGAGCTTTTGATTTTGTCAGCAAACC
TATTAACCAAATTCATTTAGATCAATTGTTAAAAAAGGCGCTTAACCAGCCAAAACCAGAGCATGAGTTCGGTGAAACAA
CATTAGAAAATGACTTATTAATTGGGCGTTCGCCACCTATACAAAACTTACGGACAGCTATTAAAAAAATAGCCCGTTCC
CAAGCACCTGTGTTTGTTACAGGTGAGTCTGGTACCGGCAAAGAAGTGGTTGCGAATCTGATTCACCGCTTAAGCAACCG
CAGTGAAGGACCATTTATTGCAATTAACTGCGGAGCAATCCCAACCGAGCTCATGGAAAGTGAACTTTTCGGGCATAAAA
AAGGGAGCTTTACTGGCGCGACTCAAGACAAACAAGGTCTGATTTTATCGGCACACGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAGTATGCAAGTTAAATTGCTTCGCGCTGTACAAGAGAAAAAGATTCGCCCAGTAGGTTCAGA
TCAGGAAATTGATGTTGATTTTCGAGTAATCAGTGCGAGTCACCAAGACTTAGATTTATTAGTTCAACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATTATGTTGCCGCCACTGCGTGACCGTGGTGGAGATATTTTGCTA
TTGGCCAATCATTTTATTCAAAAAGTTTGTATGGAATGGGGAATTTCAAGCAAGCAATTAACGGCGAGCGCTGAGACTTA
CTTATTGCAGCAAGACTTCCCGGGTAATGTTCGCGAATTAAGAAATATGATTGAACGAGCTATTACTTTAAGTGATGATG
AGTCCATTGATTTAACACACTTAGCACCTCCTCTTAGAGGCAGTAGTGTGAGCCCGCAAATCGTAACGAAACAACTAAAT
CAAACACCGACTGTTCAGACTCACCCAAAATTTCCAATGGAAGGTTTAGAACGTTACTTAGAAAATATCGAAAAAGATAT
TTTACTGAATGCGCTAAATATGACTCATTGGAATCGAACTTTGGCAGCTAAAAAGCTAGGAATGACATTTCGTTCTTTGC
GCTATCGACTCAAAAAGTTTGGCTTAGATACTGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

86.047

100

0.866
  pilR Pseudomonas aeruginosa PAK

51.096

97.021

0.496

Multiple sequence alignment