Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   BVD86_RS13705 Genome accession   NZ_CP018909
Coordinates   2847571..2849139 (+) Length   522 a.a.
NCBI ID   WP_199997689.1    Uniprot ID   -
Organism   Acinetobacter pittii strain XJ88     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2842571..2854139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVD86_RS13685 (BVD86_13735) hom 2843065..2844366 (+) 1302 WP_002121263.1 homoserine dehydrogenase -
  BVD86_RS13690 (BVD86_13740) thrC 2844421..2845560 (+) 1140 WP_060466387.1 threonine synthase -
  BVD86_RS13695 (BVD86_13745) pbpG 2845666..2846712 (-) 1047 WP_128839933.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  BVD86_RS13700 (BVD86_13750) gacA 2846925..2847560 (+) 636 WP_002121174.1 response regulator -
  BVD86_RS13705 (BVD86_13755) pilS 2847571..2849139 (+) 1569 WP_199997689.1 sensor histidine kinase Regulator
  BVD86_RS13710 (BVD86_13760) pilR 2849163..2850575 (+) 1413 WP_101664214.1 sigma-54-dependent transcriptional regulator Regulator
  BVD86_RS13715 (BVD86_13765) ctpA 2850579..2851763 (-) 1185 WP_101664215.1 S41 family peptidase -
  BVD86_RS13720 (BVD86_13770) gpmI 2851779..2853326 (-) 1548 WP_005065710.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59022.56 Da        Isoelectric Point: 6.2829

>NTDB_id=211761 BVD86_RS13705 WP_199997689.1 2847571..2849139(+) (pilS) [Acinetobacter pittii strain XJ88]
MQFPVSSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPALYSYTLLGYSLLSLLQLLCFKFIATQATRQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDAEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIELNDFIKTLLDEDLSDVK
HAIQLKSSDLSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=211761 BVD86_RS13705 WP_199997689.1 2847571..2849139(+) (pilS) [Acinetobacter pittii strain XJ88]
ATGCAATTTCCCGTAAGCTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCGCTCTATATTCTT
ACACACTACTCGGCTATTCGCTCTTAAGCCTTCTTCAACTTTTATGTTTTAAGTTTATTGCCACTCAGGCAACAAGGCAG
CTCATTTTATTTTTTGTAGTTGATATTATCTGTCTGAGTTTACTTACATTTTCAGTAGGTGAACCCAATCTTCAACTCAG
CTTGCTCTATGTTATTGCCATATTTACTTCGGCCATTTTACTTAGCGCAAGAATGTCGTTGCTCATTACATTACTTGCAG
TCATTGCGGTTATTTACCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGCGCCTTA
TTGGCCTTCTTGTTTTTTGTAGTACATGGAATCGGACAAATTGCGGTTCAGCGCTTTAAATTACTTGAAGCGCTAACTTT
CCATCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATCTTGGAACAAATTGAAGAGGGCTATTTAGTTC
TAGATGAAAACTATGACATTGTTTTAAGTAACCCAGCCGCCTGCTCTCTTTTAGGAATTCCACCTCAATTTGCCAGCGAA
AAATATCCCTTAGCAAAATGGCATGCTGACTTATTTGAAATTCTTAAATTTGATAACCTAAAAGAAGGTGATCGATTTAT
TTTTGAGTCCCGACTGTCGGCTTATTCTATTAATATTAAAGTGCAACATCTTTTGGTGCCGCAACAAGCATTAACACTAC
TCATCTTACAAGATGCGCAGCAGATTAATCAGCAAGCTCAACAACTCAAACTTGCCGCTTTAGGACAACTCTCAGCAAGT
ATTGCCCATGAGATCCGTAATCCTCTTGCAGCCATTGTTCAAGCAAATGAATTGCTCAAAGATAGTGACGCGGAACAGCA
AAACACTTTGCGCAATATGATTGGCAAGCAAACGAAACGCATTGATAGCATTGTTCAAGATACGTTAGGACTTGCCCGCA
GTGAAAGAACGTATCCCATCCAGATTGAATTAAACGACTTTATAAAAACGTTATTAGATGAAGATTTATCTGATGTTAAA
CATGCGATCCAGCTTAAAAGTTCTGATTTATCCTTAAAGCTATTGTTTGATGAAAAGCAACTCAGACAAGTCCTCATTAA
CCTTGTTAGGAATGCTCTACGACACAATGCACCCGATTCGCCCTATGTTCTGATCAATATCCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAGCCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-250)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.636

100

0.946

Multiple sequence alignment