Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   BVD86_RS11985 Genome accession   NZ_CP018909
Coordinates   2483531..2483935 (-) Length   134 a.a.
NCBI ID   WP_060465331.1    Uniprot ID   -
Organism   Acinetobacter pittii strain XJ88     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2478531..2488935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVD86_RS11955 (BVD86_12005) - 2478615..2478884 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  BVD86_RS11960 (BVD86_12010) rapZ 2478881..2479732 (-) 852 WP_005066272.1 RNase adapter RapZ -
  BVD86_RS11965 (BVD86_12015) panC 2479756..2480604 (-) 849 WP_032007086.1 pantoate--beta-alanine ligase -
  BVD86_RS11970 (BVD86_12020) panB 2480608..2481417 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  BVD86_RS11975 (BVD86_12025) folK 2481463..2481945 (-) 483 WP_014208398.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  BVD86_RS11980 (BVD86_12030) pcnB 2481942..2483405 (-) 1464 WP_101664084.1 polynucleotide adenylyltransferase PcnB -
  BVD86_RS11985 (BVD86_12035) comEA 2483531..2483935 (-) 405 WP_060465331.1 ComEA family DNA-binding protein Machinery gene
  BVD86_RS11990 (BVD86_12040) mazG 2483904..2484710 (-) 807 WP_101664085.1 nucleoside triphosphate pyrophosphohydrolase -
  BVD86_RS11995 (BVD86_12045) - 2484823..2485596 (+) 774 WP_101664086.1 SDR family oxidoreductase -
  BVD86_RS12000 (BVD86_12050) relA 2485643..2487949 (-) 2307 WP_002117181.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15371.57 Da        Isoelectric Point: 10.4113

>NTDB_id=211750 BVD86_RS11985 WP_060465331.1 2483531..2483935(-) (comEA) [Acinetobacter pittii strain XJ88]
MQLSMNLWKNKHNIFIVLFWSLISSNFVQAQSFDQNFQEWKAKQQMYDQKLSIQHASHSSVPKSSAMTDSSGQVHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=211750 BVD86_RS11985 WP_060465331.1 2483531..2483935(-) (comEA) [Acinetobacter pittii strain XJ88]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAGCACAACATTTTCATTGTTTTATTTTGGAGCCTGATTTCTTCAAACTT
TGTTCAGGCTCAATCTTTTGATCAAAATTTTCAGGAGTGGAAGGCGAAACAGCAGATGTATGATCAGAAGTTGAGCATAC
AACACGCTTCTCATTCTAGTGTTCCAAAAAGCTCAGCCATGACTGACTCTTCGGGACAAGTTCATTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCAATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

68.613

100

0.701
  comEA Acinetobacter baumannii D1279779

68.613

100

0.701
  comEA Acinetobacter baylyi ADP1

44.355

92.537

0.41

Multiple sequence alignment