Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   BVD86_RS08515 Genome accession   NZ_CP018909
Coordinates   1761823..1762530 (+) Length   235 a.a.
NCBI ID   WP_032004029.1    Uniprot ID   A0A143IXS5
Organism   Acinetobacter pittii strain XJ88     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1756823..1767530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVD86_RS08495 (BVD86_08525) - 1759635..1760444 (+) 810 WP_017386368.1 M23 family metallopeptidase -
  BVD86_RS08500 (BVD86_08530) phnO 1760441..1760866 (-) 426 WP_101664882.1 GNAT family N-acetyltransferase -
  BVD86_RS08505 (BVD86_08535) - 1760962..1761384 (-) 423 WP_002121528.1 OsmC family protein -
  BVD86_RS08510 (BVD86_08540) - 1761463..1761582 (-) 120 WP_002121587.1 hypothetical protein -
  BVD86_RS08515 (BVD86_08545) crp 1761823..1762530 (+) 708 WP_032004029.1 cAMP-activated global transcriptional regulator CRP Regulator
  BVD86_RS08520 (BVD86_08550) tas 1762690..1763739 (+) 1050 WP_101663788.1 NADP(H)-dependent aldo-keto reductase -
  BVD86_RS08525 (BVD86_08555) - 1763794..1764573 (-) 780 WP_002121572.1 M48 family metallopeptidase -
  BVD86_RS08530 (BVD86_08560) - 1764689..1765006 (-) 318 WP_032055571.1 hypothetical protein -
  BVD86_RS08535 (BVD86_08565) purA 1765128..1766447 (-) 1320 WP_044101722.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26540.12 Da        Isoelectric Point: 4.6625

>NTDB_id=211746 BVD86_RS08515 WP_032004029.1 1761823..1762530(+) (crp) [Acinetobacter pittii strain XJ88]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENTVSDEDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=211746 BVD86_RS08515 WP_032004029.1 1761823..1762530(+) (crp) [Acinetobacter pittii strain XJ88]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTGCGTGAAGATGATGAACGTGAAATTGTTGTTGCGTATTTAAATCCGGGCGATTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCCGAAGTTCGAACTCGTGATGTCTGTGAAATTGCAGA
GATCTCTTATGACAACTTCCACGAACTTAGCAAACAATACCCAGACTTAAGCTATGCTGTTTTTGCACAATTAGTTCGCC
GTCTAAAAAATACGACTCGTAAAATGACAGATCTTGCGTTCATTGATGTGTCTGGCCGTATTGCACGTTGTTTAATCGAT
CTATCTTCTCAACCAGAAGCAATGATTTTGCCGAATGGTCGTCAAATTCGCATTACTCGTCAAGAAATTGGCCGTATTGT
TGGATGTTCACGTGAGATGGTTGGTCGTGTACTCAAAACCTTAGAAGATCAAGGTATGATCCAAACTGATGGTAAAGCCA
TTCTTATTTTTGATGCATCATTAGAAGAAAACACTGTTTCTGATGAAGACTACGACGATGAAGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A143IXS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

97.872

100

0.979
  crp Vibrio cholerae strain A1552

47.087

87.66

0.413
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404

Multiple sequence alignment