Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   BVD88_RS08030 Genome accession   NZ_CP018907
Coordinates   1348718..1349191 (-) Length   157 a.a.
NCBI ID   WP_002247808.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21273     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1343718..1354191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVD88_RS14395 - 1344471..1344596 (-) 126 Protein_1302 IS5/IS1182 family transposase -
  BVD88_RS07995 (BVD88_08345) dapC 1344684..1345871 (-) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -
  BVD88_RS08000 (BVD88_08350) dut 1345947..1346399 (-) 453 WP_002220679.1 dUTP diphosphatase -
  BVD88_RS08005 (BVD88_08355) - 1346542..1346970 (+) 429 Protein_1305 AzlC family ABC transporter permease -
  BVD88_RS08030 (BVD88_08380) pilX 1348718..1349191 (-) 474 WP_002247808.1 PilX family type IV pilin Machinery gene
  BVD88_RS08035 (BVD88_08385) pilK 1349196..1349795 (-) 600 WP_002220676.1 pilus assembly PilX family protein Machinery gene
  BVD88_RS08040 (BVD88_08390) pilJ 1349774..1350712 (-) 939 WP_104916082.1 PilW family protein Machinery gene
  BVD88_RS08045 (BVD88_08395) pilV 1350709..1351329 (-) 621 WP_061725124.1 type IV pilus modification protein PilV Machinery gene
  BVD88_RS08050 (BVD88_08400) pilH 1351353..1352030 (-) 678 WP_061701871.1 GspH/FimT family pseudopilin Machinery gene
  BVD88_RS08055 (BVD88_08410) dnaB 1352339..1353745 (-) 1407 WP_002213843.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17402.18 Da        Isoelectric Point: 9.7122

>NTDB_id=211665 BVD88_RS08030 WP_002247808.1 1348718..1349191(-) (pilX) [Neisseria meningitidis strain M21273]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNTVKQLILKNPLDDNQTIKSKLEIFVSGYKM
NPKIAKKYSVSVRFVDKEKSRAYSLVGVPKAGTGYTLSVWMNSVGDGYKCRDAASARAYSETLSADAGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=211665 BVD88_RS08030 WP_002247808.1 1348718..1349191(-) (pilX) [Neisseria meningitidis strain M21273]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATACTGTCAAAC
AGCTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAGGTTTGTCGATAAGGAAAAATCAAGGGCATACAGCTTGGTCGG
CGTTCCGAAGGCGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCGAGCCTATTCGGAGACTTTATCCGCAGATGCCGGCTGCGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

91.083

100

0.911
  pilL Neisseria gonorrhoeae MS11

89.172

100

0.892

Multiple sequence alignment