Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   A3411_RS18150 Genome accession   NZ_CP024228
Coordinates   3479011..3479643 (-) Length   210 a.a.
NCBI ID   WP_001735800.1    Uniprot ID   -
Organism   Escherichia coli O25:NM strain 2014EL-1343-2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3474011..3484643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3411_RS18125 yhfG 3474143..3474310 (+) 168 WP_000736860.1 YhfG family protein -
  A3411_RS18130 fic 3474300..3474902 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  A3411_RS18135 pabA 3474934..3475497 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  A3411_RS18140 argD 3475583..3476803 (+) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  A3411_RS18145 yhfK 3476870..3478960 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  A3411_RS18150 crp 3479011..3479643 (-) 633 WP_001735800.1 cAMP-activated global transcriptional regulator CRP Regulator
  A3411_RS18160 yhfA 3479945..3480349 (+) 405 WP_001148908.1 OsmC family protein -
  A3411_RS18165 prkB 3480404..3481273 (-) 870 WP_001274680.1 phosphoribulokinase -
  A3411_RS18170 yheU 3481327..3481545 (-) 219 WP_000907085.1 YheU family protein -
  A3411_RS18175 yheT 3481539..3482561 (-) 1023 WP_000057356.1 hydrolase -
  A3411_RS18180 yheS 3482561..3484474 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23649.44 Da        Isoelectric Point: 8.2778

>NTDB_id=211642 A3411_RS18150 WP_001735800.1 3479011..3479643(-) (crp) [Escherichia coli O25:NM strain 2014EL-1343-2]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGHIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=211642 A3411_RS18150 WP_001735800.1 3479011..3479643(-) (crp) [Escherichia coli O25:NM strain 2014EL-1343-2]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCATATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTTGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.238

100

0.952
  crp Haemophilus influenzae Rd KW20

77.451

97.143

0.752
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467