Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CJV63_RS09205 Genome accession   NZ_CP024223
Coordinates   1793078..1793710 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli O169:H41 strain 2014EL-1345-2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1788078..1798710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJV63_RS09175 yheS 1788247..1790160 (+) 1914 WP_001613950.1 ABC transporter ATP-binding protein -
  CJV63_RS09180 yheT 1790160..1791182 (+) 1023 WP_000057392.1 hydrolase -
  CJV63_RS09185 yheU 1791176..1791394 (+) 219 WP_000907085.1 YheU family protein -
  CJV63_RS09190 prkB 1791448..1792317 (+) 870 WP_001274680.1 phosphoribulokinase -
  CJV63_RS09195 yhfA 1792372..1792776 (-) 405 WP_001148908.1 OsmC family protein -
  CJV63_RS09205 crp 1793078..1793710 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  CJV63_RS09210 yhfK 1793761..1795851 (+) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  CJV63_RS09215 argD 1795918..1797138 (-) 1221 WP_001718947.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  CJV63_RS09220 pabA 1797224..1797787 (-) 564 WP_001718948.1 aminodeoxychorismate synthase component 2 -
  CJV63_RS09225 fic 1797819..1798421 (-) 603 WP_001718949.1 putative adenosine monophosphate-protein transferase Fic -
  CJV63_RS09230 yhfG 1798411..1798578 (-) 168 WP_032201336.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=211536 CJV63_RS09205 WP_000242755.1 1793078..1793710(+) (crp) [Escherichia coli O169:H41 strain 2014EL-1345-2]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=211536 CJV63_RS09205 WP_000242755.1 1793078..1793710(+) (crp) [Escherichia coli O169:H41 strain 2014EL-1345-2]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTCAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTTGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment