Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   KSH_RS06395 Genome accession   NZ_CP024180
Coordinates   1432038..1434155 (-) Length   705 a.a.
NCBI ID   WP_099808200.1    Uniprot ID   -
Organism   Moraxella osloensis strain KSH     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1427038..1439155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSH_RS12595 (KSH_06370) - 1427053..1427181 (-) 129 WP_257721699.1 hypothetical protein -
  KSH_RS06380 (KSH_06375) - 1427249..1428517 (-) 1269 WP_099808197.1 YbfB/YjiJ family MFS transporter -
  KSH_RS06385 (KSH_06380) pepN 1428573..1431272 (-) 2700 WP_099808198.1 aminopeptidase N -
  KSH_RS06390 (KSH_06385) - 1431513..1431923 (+) 411 WP_227522731.1 MgtC/SapB family protein -
  KSH_RS06395 (KSH_06390) uvrB 1432038..1434155 (-) 2118 WP_099808200.1 excinuclease ABC subunit UvrB Machinery gene
  KSH_RS06400 (KSH_06395) metK 1434599..1435765 (+) 1167 WP_007115720.1 methionine adenosyltransferase -
  KSH_RS06405 (KSH_06400) - 1435870..1436184 (+) 315 WP_099808201.1 DUF3144 domain-containing protein -
  KSH_RS06410 (KSH_06405) - 1436269..1436853 (+) 585 WP_099808202.1 hypothetical protein -
  KSH_RS06415 (KSH_06410) - 1436979..1437335 (-) 357 WP_099808203.1 hypothetical protein -
  KSH_RS06420 (KSH_06415) prpB 1437709..1438602 (+) 894 WP_198510924.1 methylisocitrate lyase -

Sequence

Protein


Download         Length: 705 a.a.        Molecular weight: 80077.26 Da        Isoelectric Point: 5.5961

>NTDB_id=211436 KSH_RS06395 WP_099808200.1 1432038..1434155(-) (uvrB) [Moraxella osloensis strain KSH]
MRPPQSSRSERELSQLARQIQDDAQITGVNASGTQISSKPFEMVTEFEPSGDQPQAIAKLVDGVDKGMHGQLLLGVTGSG
KTYTMAKVIAQCQRPTIIMAHNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSAINDHIDQMRL
SATRALLERRDAIIIASVSCIYGLGDPESYLKMLLHIVVGDKIDRTAMLKRLVELQYTRNELDFGRGTYRLRGEVLDIYP
AESEQLAVRISMFDDEVEKITWFDPLTGKNVRSVPRITIYPKSHYVTPRDKLEKASGTIKAELEQRLEYFRAHDKLIEAQ
RIKERTTYDLEMIQQLGYCNGIENYSRHLSGRPAGEAPPTLFDYIPPDALLFIDESHVTVPQVGAMYKGDRSRKETLVNY
GFRLPSAMDNRPLMFEEWERITPSTIFVSATPAQYELEHSEQVVEQVVRPTGLVDPQLEIRPVLTQVDDVLSEINIRKAK
DERVLITTLTKRMAEDLTSYLKEYNIKVAYLHSDIDTVERMKIIHELRTGVHDVLVGINLLREGLDMPEVSLVAIFDADK
EGFLRSERSLIQTIGRAARHVNGKAILYADSITPSMQKAIEETERRRAKQIAYNEEHGITPTSARRQITDKIDTGEAEAL
NDNQAIAVTHAFPDVDISILRSPDLLTKEIARLEKEMKSLSRDLKFEEAAKVRDKVVSLREFVLQ

Nucleotide


Download         Length: 2118 bp        

>NTDB_id=211436 KSH_RS06395 WP_099808200.1 1432038..1434155(-) (uvrB) [Moraxella osloensis strain KSH]
ATGCGACCACCTCAATCTTCCCGATCCGAACGTGAACTTAGCCAACTTGCCCGCCAAATCCAAGATGATGCCCAAATCAC
CGGTGTCAATGCCAGTGGCACCCAAATCTCAAGTAAACCTTTTGAGATGGTGACCGAATTTGAACCATCAGGCGACCAAC
CGCAAGCGATTGCCAAATTGGTTGACGGTGTCGACAAAGGCATGCACGGTCAGCTGCTCTTAGGGGTGACAGGCTCAGGT
AAAACCTACACCATGGCAAAAGTGATTGCCCAATGCCAGCGTCCCACCATCATCATGGCACACAACAAAACCCTTGCCGC
CCAGCTATATGGCGAGTTTAAGGCGTTCTTTCCCCACAATGCTGTGGAGTATTTTGTCAGTTATTATGACTATTATCAGC
CTGAAGCGTATGTACCTGCCAGCGATACCTTTATCGAAAAAGACAGCGCCATCAACGACCATATCGACCAAATGCGACTG
TCCGCCACGCGTGCGCTACTCGAACGTCGTGACGCCATTATCATTGCATCGGTATCTTGTATCTATGGTCTCGGTGACCC
AGAAAGCTACCTAAAAATGCTCCTCCACATCGTAGTGGGTGACAAAATCGACCGCACTGCCATGCTCAAACGCTTGGTGG
AGCTGCAATATACGCGTAACGAGCTTGACTTTGGGCGAGGTACTTACCGCTTGCGTGGTGAAGTGCTCGATATTTACCCA
GCTGAGTCTGAACAGCTTGCGGTGCGTATCAGTATGTTTGATGATGAAGTGGAAAAAATCACTTGGTTTGACCCGTTGAC
AGGTAAGAACGTGCGCAGTGTGCCACGCATTACCATCTATCCAAAATCTCACTACGTCACCCCACGAGACAAGCTAGAAA
AAGCCAGTGGTACTATCAAAGCCGAGCTTGAACAACGCCTTGAGTATTTTCGAGCGCATGACAAACTGATTGAAGCCCAG
CGTATCAAAGAACGCACCACTTATGATTTGGAAATGATTCAACAGCTTGGCTACTGTAACGGCATTGAGAACTATTCGCG
CCATTTATCGGGACGTCCTGCGGGTGAAGCACCGCCGACGTTGTTTGACTATATTCCGCCCGATGCCTTGCTATTTATTG
ACGAAAGCCATGTAACCGTGCCACAAGTCGGCGCGATGTACAAAGGCGATAGAAGTCGTAAAGAAACCTTGGTCAATTAT
GGCTTTCGCCTGCCATCTGCGATGGATAACCGCCCACTGATGTTTGAAGAATGGGAGCGTATTACCCCTTCTACCATTTT
TGTGTCGGCGACCCCTGCCCAATACGAGCTTGAGCATAGCGAACAGGTCGTAGAGCAAGTGGTACGTCCGACCGGTCTAG
TGGATCCACAGCTTGAGATTCGTCCTGTCTTGACCCAAGTTGATGATGTGCTATCGGAAATCAACATTCGTAAAGCCAAA
GATGAGCGAGTGCTGATTACCACGCTCACCAAACGCATGGCAGAAGATTTGACCAGTTATCTAAAAGAGTACAACATCAA
AGTCGCTTATTTGCACTCGGATATCGACACGGTGGAGCGGATGAAAATCATCCACGAACTGCGCACAGGCGTGCATGATG
TGCTGGTTGGTATCAATCTGTTGCGTGAGGGTTTGGATATGCCTGAGGTGAGCTTGGTGGCGATTTTTGATGCGGATAAA
GAAGGCTTCTTACGCTCGGAGCGTTCGCTCATTCAGACCATCGGTCGTGCCGCGCGCCATGTCAATGGTAAGGCGATTTT
GTACGCTGACAGCATTACCCCAAGTATGCAAAAGGCGATTGAAGAAACCGAGCGTCGCCGTGCCAAACAGATAGCATATA
ACGAAGAACATGGTATCACGCCGACATCCGCTCGCCGTCAGATTACCGATAAAATCGACACAGGCGAGGCAGAAGCCCTG
AATGATAACCAAGCGATTGCGGTCACCCATGCGTTCCCCGATGTGGATATTTCGATTTTGCGTTCGCCTGATTTGCTGAC
CAAAGAGATTGCACGGCTAGAAAAAGAGATGAAATCCTTGTCGCGTGATTTGAAGTTTGAGGAAGCGGCAAAAGTGCGCG
ATAAAGTGGTAAGCCTAAGAGAGTTTGTGTTGCAATGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(587-628)

UvrB interaction domain (UvrB_inter)

(195-285)

Helicase conserved C-terminal domain (Helicase_C)

(473-579)

Type III restriction enzyme, res subunit (ResIII)

(47-123)

UvrB/uvrC motif (UVR)

(668-701)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.689

94.752

0.528
  uvrB Streptococcus pneumoniae R6

55.689

94.752

0.528
  uvrB Streptococcus pneumoniae D39

55.689

94.752

0.528