Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   YHS_RS06680 Genome accession   NZ_CP024176
Coordinates   1517502..1519619 (-) Length   705 a.a.
NCBI ID   WP_099834134.1    Uniprot ID   -
Organism   Moraxella osloensis strain YHS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1512502..1524619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YHS_RS06665 (YHS_06670) - 1512734..1514002 (-) 1269 WP_099834132.1 YbfB/YjiJ family MFS transporter -
  YHS_RS06670 (YHS_06675) pepN 1514058..1516757 (-) 2700 WP_099834133.1 aminopeptidase N -
  YHS_RS06675 (YHS_06680) - 1516998..1517408 (+) 411 WP_227522636.1 MgtC/SapB family protein -
  YHS_RS06680 (YHS_06685) uvrB 1517502..1519619 (-) 2118 WP_099834134.1 excinuclease ABC subunit UvrB Machinery gene
  YHS_RS06685 (YHS_06690) metK 1520061..1521227 (+) 1167 WP_099834135.1 methionine adenosyltransferase -
  YHS_RS06690 (YHS_06695) - 1521314..1521628 (+) 315 WP_007115719.1 DUF3144 domain-containing protein -
  YHS_RS06695 (YHS_06700) - 1521713..1522297 (+) 585 WP_099834136.1 hypothetical protein -
  YHS_RS06700 (YHS_06705) - 1522409..1522765 (-) 357 WP_007115717.1 hypothetical protein -
  YHS_RS06705 (YHS_06710) prpB 1523139..1524032 (+) 894 WP_198510405.1 methylisocitrate lyase -

Sequence

Protein


Download         Length: 705 a.a.        Molecular weight: 80077.30 Da        Isoelectric Point: 5.5961

>NTDB_id=211384 YHS_RS06680 WP_099834134.1 1517502..1519619(-) (uvrB) [Moraxella osloensis strain YHS]
MRPPQSSRSERELSQLARQIQDDAQITGVNASGTQISSKPFEMVTEFEPSGDQPQAIAKLVDGVDKGMHGQLLLGVTGSG
KTYTMAKVIAQCQRPTIIMAHNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSAINDHIDQMRL
SATRALLERRDAIIIASVSCIYGLGDPESYLKMLLHIVVGDKIDRTAMLKRLVELQYTRNELDFGRGTYRLRGEVLDIYP
AESEQLAVRISMFDDEVEKITWFDPLTGKNVRSVPRITIYPKSHYVTPRDKLERASGTIKAELEQRLEYFRAHDKLIEAQ
RIKERTTYDLEMIQQLGYCNGIENYSRHLSGRPAGEAPPTLFDYIPPDALLFIDESHVTVPQVGAMYKGDRSRKETLVNY
GFRLPSAMDNRPLMFEEWERITPATIFVSATPAQYELEHSEQVVEQVVRPTGLVDPQLEIRPVLTQVDDVLSEINIRKAK
DERVLITTLTKRMAEDLTSYLKEYNIKVAYLHSDIDTVERMKIIHELRTGVHDVLVGINLLREGLDMPEVSLVAIFDADK
EGFLRSERSLIQTIGRAARHVNGKAILYADSITPSMQKAMEETERRRAKQMAYNEEHGITPTSARRQITDKIDTGEAEAP
NDNQAIAITHAFPDVDISILRSPDLLAKEIARLEKEMKALSRDLKFEEAAKVRDKVVSLREFVLQ

Nucleotide


Download         Length: 2118 bp        

>NTDB_id=211384 YHS_RS06680 WP_099834134.1 1517502..1519619(-) (uvrB) [Moraxella osloensis strain YHS]
ATGCGACCACCTCAATCTTCCCGCTCCGAACGTGAACTTAGCCAACTAGCCCGCCAAATCCAAGATGATGCCCAAATCAC
AGGTGTCAATGCCAGTGGCACCCAAATCTCAAGTAAACCTTTTGAGATGGTGACCGAATTTGAACCATCAGGCGACCAAC
CGCAAGCGATTGCCAAATTGGTTGACGGTGTCGACAAAGGCATGCACGGTCAGTTGCTCTTAGGGGTGACAGGCTCAGGT
AAAACCTACACCATGGCAAAAGTGATTGCCCAATGCCAGCGTCCTACCATTATCATGGCACATAATAAAACCCTTGCTGC
CCAGCTATATGGCGAGTTTAAGGCGTTCTTTCCCCACAATGCTGTGGAGTATTTTGTCAGTTATTACGACTACTATCAGC
CTGAAGCATATGTGCCTGCCAGTGATACCTTTATCGAAAAAGACAGCGCCATTAATGACCATATTGACCAAATGCGACTG
TCGGCCACGCGTGCGCTACTCGAACGTCGTGATGCCATTATCATTGCATCGGTGTCTTGTATTTATGGTCTAGGCGACCC
AGAAAGCTACCTAAAAATGCTCCTCCACATTGTAGTGGGTGACAAAATCGATCGCACTGCCATGCTCAAACGCTTGGTGG
AGTTGCAATATACGCGTAACGAGCTTGACTTTGGGCGAGGTACTTACCGTTTGCGTGGTGAAGTGCTAGATATTTACCCC
GCTGAGTCTGAACAGCTTGCGGTGCGTATCAGTATGTTTGATGATGAAGTGGAAAAAATCACTTGGTTTGACCCGTTGAC
AGGTAAGAACGTGCGCAGTGTGCCACGCATTACCATCTATCCAAAATCTCACTACGTGACCCCACGAGACAAGCTCGAAA
GAGCCAGTGGCACTATCAAAGCTGAGCTTGAACAACGCCTTGAGTATTTTCGAGCGCATGACAAACTGATTGAAGCGCAG
CGTATCAAAGAACGCACCACTTATGATTTGGAAATGATTCAACAGCTTGGCTACTGTAACGGCATTGAGAACTATTCGCG
CCATTTATCGGGACGTCCTGCGGGCGAGGCGCCGCCGACGTTGTTTGACTATATTCCGCCCGACGCCTTGCTATTTATTG
ACGAAAGCCATGTAACCGTGCCACAAGTCGGCGCCATGTACAAAGGCGATAGAAGTCGTAAAGAAACCTTGGTCAATTAT
GGCTTTCGCCTGCCATCCGCGATGGATAACCGCCCGCTGATGTTTGAAGAATGGGAGCGTATTACCCCTGCGACCATTTT
TGTGTCGGCGACCCCTGCCCAATATGAACTTGAGCATAGCGAGCAGGTCGTTGAGCAAGTGGTACGTCCGACCGGTCTAG
TGGATCCACAGCTTGAGATTCGTCCTGTCTTGACCCAAGTTGATGATGTGCTATCGGAAATCAACATTCGTAAAGCCAAA
GATGAGCGAGTGCTGATTACCACGCTCACTAAACGCATGGCAGAAGACTTGACCAGTTATCTAAAAGAGTACAACATCAA
AGTCGCTTATCTGCATTCGGATATCGACACGGTGGAGCGGATGAAAATCATCCATGAACTGCGCACAGGTGTGCATGATG
TGCTGGTCGGTATCAACCTGTTGCGTGAGGGCTTGGATATGCCTGAGGTGAGCTTGGTGGCGATTTTTGATGCGGATAAA
GAAGGCTTTTTACGCTCGGAGCGTTCGCTCATTCAGACCATCGGTCGTGCCGCGCGCCATGTCAATGGTAAGGCGATTTT
ATACGCTGACAGCATTACCCCAAGTATGCAAAAGGCGATGGAAGAAACCGAGCGTCGCCGTGCCAAACAGATGGCGTATA
ACGAAGAACATGGCATCACGCCGACATCCGCTCGCCGTCAGATTACCGATAAAATCGACACAGGCGAGGCAGAAGCCCCG
AATGATAACCAAGCGATTGCCATCACCCATGCGTTCCCCGATGTGGATATTTCGATTTTGCGTTCGCCTGATTTGCTTGC
CAAAGAGATTGCACGGTTAGAAAAAGAGATGAAAGCCTTGTCGCGTGATTTGAAGTTTGAAGAAGCGGCGAAAGTGCGGG
ATAAAGTGGTAAGTTTACGTGAGTTTGTGCTGCAATGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(47-123)

UvrB interaction domain (UvrB_inter)

(195-285)

Ultra-violet resistance protein B (UvrB)

(587-628)

Helicase conserved C-terminal domain (Helicase_C)

(473-579)

UvrB/uvrC motif (UVR)

(668-701)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.689

94.752

0.528
  uvrB Streptococcus pneumoniae R6

55.689

94.752

0.528
  uvrB Streptococcus pneumoniae D39

55.689

94.752

0.528

Multiple sequence alignment