Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   AHTJS_RS15960 Genome accession   NZ_CP018871
Coordinates   3255074..3256204 (+) Length   376 a.a.
NCBI ID   WP_075316375.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain TJS01     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3250074..3261204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHTJS_RS15940 (AHTJS_15925) - 3250612..3252723 (-) 2112 WP_075316374.1 TonB-dependent receptor domain-containing protein -
  AHTJS_RS15945 (AHTJS_15930) - 3252797..3253234 (-) 438 WP_004637503.1 DUF2946 family protein -
  AHTJS_RS15950 (AHTJS_15935) def 3253255..3253785 (-) 531 WP_004637502.1 peptide deformylase -
  AHTJS_RS15955 (AHTJS_15940) tsaP 3253911..3255062 (+) 1152 WP_005085668.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  AHTJS_RS15960 (AHTJS_15945) dprA 3255074..3256204 (+) 1131 WP_075316375.1 DNA-processing protein DprA Machinery gene
  AHTJS_RS15965 (AHTJS_15950) - 3256242..3256811 (+) 570 WP_005085670.1 Sua5/YciO/YrdC/YwlC family protein -
  AHTJS_RS15970 (AHTJS_15955) - 3257186..3258106 (-) 921 WP_075316376.1 DMT family transporter -
  AHTJS_RS15975 (AHTJS_15960) - 3258209..3258856 (-) 648 WP_075316377.1 TetR/AcrR family transcriptional regulator -
  AHTJS_RS15980 (AHTJS_15965) - 3259003..3260226 (+) 1224 WP_075316378.1 MFS transporter -
  AHTJS_RS15985 (AHTJS_15970) - 3260238..3261011 (+) 774 WP_075316379.1 helix-turn-helix transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41883.52 Da        Isoelectric Point: 6.7267

>NTDB_id=211185 AHTJS_RS15960 WP_075316375.1 3255074..3256204(+) (dprA) [Acinetobacter haemolyticus strain TJS01]
MLNQLLPHHYSTVLVWYLVQHSLSSFQKIVDYFGNCEQATQTERFPEWQQLGLHANHLKRLAEFQTPDGQQQFAQLVKLI
CQHSDFILTPQDIGYPTQLLPYSDHPPILFGQGNPHALLQPQIAMVGSRKPSPHGRQVAYDFAYYLSEKGFYISSGLAHG
IDHAAHQGGLAHQRTIAVVGTGLDRVYPTQHVQLAQQIAQSGAIISEFLPSTMPLQQHFPRRNRIVSGLSLGVVVVEAAI
KSGSLITANQAASQGKMVFAIPGHIYSEHHQGCHQLIREGAILVDHPEQVIEDLALPTQWQSEQQSSEKSSNAAPNLPSH
LVGLYQCLDWVGQDIDQLTQQQQSNIAELTSHLMELELLGLCTQQGGRYLRCRPML

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=211185 AHTJS_RS15960 WP_075316375.1 3255074..3256204(+) (dprA) [Acinetobacter haemolyticus strain TJS01]
ATGTTGAACCAATTATTACCACACCATTACTCTACCGTGCTGGTGTGGTATTTGGTTCAACATTCACTTTCTAGCTTTCA
AAAAATTGTCGACTATTTTGGCAATTGCGAACAGGCCACCCAAACTGAGCGCTTCCCTGAATGGCAACAACTGGGTTTAC
ATGCCAATCATTTAAAACGTTTAGCTGAATTTCAAACACCTGACGGGCAACAACAATTTGCTCAGTTAGTAAAATTAATC
TGTCAACATAGTGATTTTATTTTAACACCCCAAGATATTGGCTATCCGACACAACTGCTCCCTTACTCAGACCATCCACC
GATACTTTTTGGACAAGGGAATCCACACGCTTTATTACAGCCACAAATCGCGATGGTAGGAAGCCGCAAACCGAGTCCTC
ATGGGCGCCAAGTCGCTTATGATTTTGCGTATTATTTAAGTGAAAAAGGTTTTTATATTAGTAGTGGTCTAGCCCATGGT
ATTGATCATGCTGCACATCAAGGTGGATTGGCTCATCAACGTACCATTGCTGTTGTTGGAACAGGATTAGACCGTGTCTA
TCCAACTCAACATGTACAACTAGCCCAGCAAATTGCACAGTCGGGTGCTATCATCTCCGAGTTCCTTCCCTCCACTATGC
CTTTACAACAACATTTCCCTCGTCGTAATCGAATTGTCAGTGGCTTAAGTCTTGGTGTTGTTGTGGTTGAAGCTGCAATA
AAAAGTGGTTCTCTTATTACTGCCAATCAGGCGGCTAGCCAAGGAAAAATGGTGTTTGCGATTCCTGGGCATATCTATAG
TGAACATCATCAAGGCTGTCACCAACTCATTCGAGAAGGTGCAATCTTAGTCGATCATCCTGAGCAAGTAATCGAGGACT
TAGCCTTACCTACTCAATGGCAATCTGAACAGCAATCTTCAGAAAAATCCTCAAATGCGGCCCCAAACCTTCCCTCACAC
TTGGTTGGTCTATATCAATGTTTAGACTGGGTTGGACAAGACATAGACCAACTCACACAACAACAGCAAAGCAATATTGC
TGAGCTTACTTCACACCTCATGGAACTTGAGCTATTAGGTTTATGTACACAACAAGGCGGACGCTATTTACGTTGTCGTC
CAATGCTTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

72.8

99.734

0.726

  dprA Acinetobacter baumannii strain A118

72.533

99.734

0.723

  dprA Acinetobacter baylyi ADP1

67.368

100

0.681


Multiple sequence alignment