Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AHTJS_RS15325 Genome accession   NZ_CP018871
Coordinates   3118806..3120236 (+) Length   476 a.a.
NCBI ID   WP_075316336.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain TJS01     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3113806..3125236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHTJS_RS15305 (AHTJS_15290) thrC 3114091..3115230 (+) 1140 WP_004637599.1 threonine synthase -
  AHTJS_RS15310 (AHTJS_15295) pbpG 3115289..3116353 (-) 1065 WP_075316334.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  AHTJS_RS15315 (AHTJS_15300) - 3116564..3117199 (+) 636 WP_005083960.1 response regulator -
  AHTJS_RS15320 (AHTJS_15305) pilS 3117218..3118783 (+) 1566 WP_075316335.1 sensor histidine kinase Regulator
  AHTJS_RS15325 (AHTJS_15310) pilR 3118806..3120236 (+) 1431 WP_075316336.1 sigma-54-dependent transcriptional regulator Regulator
  AHTJS_RS18070 - 3120336..3121261 (-) 926 Protein_2929 IS3 family transposase -
  AHTJS_RS15340 (AHTJS_15325) - 3121339..3122505 (-) 1167 WP_075316338.1 S41 family peptidase -
  AHTJS_RS15345 (AHTJS_15330) gpmI 3122515..3124059 (-) 1545 WP_075316339.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53592.60 Da        Isoelectric Point: 6.2977

>NTDB_id=211183 AHTJS_RS15325 WP_075316336.1 3118806..3120236(+) (pilR) [Acinetobacter haemolyticus strain TJS01]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVQHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLIQKALNRPRPEQEAAETALENKLLIGRSAPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILL
LANHFIQRICKEWELPAKTLSSRAEQFLLQQYFPGNVRELRNIIERAITLSDDETIDLAHLQTAPLRSPISMPSAPSYSQ
EEVEQPQYTSPNTSSKKLPPEGLERYLENIEKEVLLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEEDDT

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=211183 AHTJS_RS15325 WP_075316336.1 3118806..3120236(+) (pilR) [Acinetobacter haemolyticus strain TJS01]
ATGGCAACTAAACAACCACTCGTCTTGCTCGTAGACGACGAAGAGGACTTGTGTCTTCTCATGCAAATGACACTTGCGCG
TATGGGAATTAAGACACATTTGGCTTATCGTGTAGAGCAAGCAAAAAAATTCTTTACTGAATTTCAATATGATGCATGTT
TAACTGATTTAAATCTTCCAGACGGCAACGGTTTAGATCTCGTCCAACATGTCACCCAAAATTACCCAAATACTCCGATC
GCTGTGCTGACGGCCTATGGCAATATGGACATTGCGATTGCAGCATTAAAAGCTGGGGCATTTGACTTCGTTAGCAAACC
AGTCAACCAAGTGCATTTGGATCAATTGATTCAAAAAGCATTGAATCGACCACGACCTGAGCAAGAAGCGGCTGAAACAG
CCTTAGAAAATAAACTCCTGATTGGACGTTCTGCGCCAATTCAACAACTGCGCATTGCATTAAAGAAAATCGCGCGATCA
CAAGCGCCTGTCTTTATCACTGGGGAGTCGGGAACTGGAAAAGAAGTTGTTGCCAACTTGGTTCACCGCTTAAGTAATCG
TAGTGAAGGGCCTTTTATTGCCATAAACTGCGGTGCAATTCCAACAGAACTGATGGAAAGCGAGCTTTTCGGGCACAAAA
AAGGCAGTTTCACTGGGGCGACCCAAGATAAACAAGGTTTAATTTTATCAGCACATGGCGGTAGTTTATTTCTCGATGAA
ATCGCTGAACTGCCACTCAACATGCAAGTAAAATTATTGCGTGCAGTGCAAGAAAAGAAAATCCGCCCTGTAGGCTCAGA
CCAAGAAATTGATGTCGATTTCCGTGTGATTAGTGCCAGTCACCAAGATCTTGAGTTACTGGTTCAGCAAGGACGATTCC
GACAGGATTTATTTTTCCGTATCCACGTTATGGATATTGTACTCCCACCATTACGTGAACGTGGACAGGACATCCTGTTA
TTAGCGAATCATTTTATCCAAAGAATTTGCAAAGAATGGGAACTGCCTGCCAAGACGTTATCGTCTCGCGCAGAGCAATT
TTTATTACAACAATATTTTCCTGGTAATGTGCGCGAACTACGCAATATTATTGAACGTGCAATCACGCTCAGCGATGATG
AAACGATTGATTTAGCGCACTTACAAACAGCGCCATTACGCAGTCCAATTTCAATGCCATCAGCGCCATCTTATAGCCAA
GAAGAAGTTGAGCAGCCACAATACACCAGCCCAAACACAAGTTCGAAAAAACTTCCACCTGAAGGTTTAGAGCGTTATTT
AGAAAATATTGAAAAAGAAGTGCTACTTAATGCATTAAATCTAACCCATTGGAATCGAACGCTCGCCGCGAAGAAACTCG
GGATGACCTTCCGTTCTTTGCGTTATCGTTTGAAAAAATTCGGATTAGATACTGAAGAAGATGACACCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(427-467)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

84.454

100

0.845
  pilR Pseudomonas aeruginosa PAK

51.188

97.269

0.498

Multiple sequence alignment