Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AHTJS_RS15320 Genome accession   NZ_CP018871
Coordinates   3117218..3118783 (+) Length   521 a.a.
NCBI ID   WP_075316335.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain TJS01     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3112218..3123783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHTJS_RS15300 (AHTJS_15285) - 3112731..3114032 (+) 1302 WP_026056262.1 homoserine dehydrogenase -
  AHTJS_RS15305 (AHTJS_15290) thrC 3114091..3115230 (+) 1140 WP_004637599.1 threonine synthase -
  AHTJS_RS15310 (AHTJS_15295) pbpG 3115289..3116353 (-) 1065 WP_075316334.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  AHTJS_RS15315 (AHTJS_15300) - 3116564..3117199 (+) 636 WP_005083960.1 response regulator -
  AHTJS_RS15320 (AHTJS_15305) pilS 3117218..3118783 (+) 1566 WP_075316335.1 sensor histidine kinase Regulator
  AHTJS_RS15325 (AHTJS_15310) pilR 3118806..3120236 (+) 1431 WP_075316336.1 sigma-54-dependent transcriptional regulator Regulator
  AHTJS_RS18070 - 3120336..3121261 (-) 926 Protein_2929 IS3 family transposase -
  AHTJS_RS15340 (AHTJS_15325) - 3121339..3122505 (-) 1167 WP_075316338.1 S41 family peptidase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59439.49 Da        Isoelectric Point: 6.5501

>NTDB_id=211182 AHTJS_RS15320 WP_075316335.1 3117218..3118783(+) (pilS) [Acinetobacter haemolyticus strain TJS01]
MLGKVASSVSQTIYQLGMWYSGYRLIISVCLLLIFLLTAEQLTTNYLYPTLYSYTLIVYIALNVSQLLFLKLFPAHVNKQ
LIAIFLVDVICLSTITFATGGPNLQLSLLYVIIIFASAILLNAQLSLVVTLLAVIMIVYQRFLGNLFDYNNLNHLSNSLL
LVFLFLVVYAIGRIAVQRFKILEALTFHQSIEIHQLQNINRYILEQIEDGYLVLDESNHIVLTNPAANTLLGIHLPVSHE
KTPLIKWQPDLFELIKFSDLEDGEEFTFESQQSLYTVHVRVKHLVVPEQALVLLILKDAQKLTQRVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELFNESDAHQQQMLTRMIRKQAKRIDRIVEDTLAMARNKPTEPQNIHLVEFFESLFEEDLVDVK
HMIQLELSENIQILFDDKQLRQVLINLVRNALRHNASDIPYIEIKVHAEETKVRIDVIDFGLGVAKRDLSQLFKPFFSTE
IKGTGLGLYLSHSFCEANHAKLTYVERQQGACFRIECSIIN

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=211182 AHTJS_RS15320 WP_075316335.1 3117218..3118783(+) (pilS) [Acinetobacter haemolyticus strain TJS01]
ATGTTGGGAAAAGTTGCATCTTCGGTGTCACAAACCATTTACCAGCTTGGGATGTGGTATAGCGGATATCGCCTCATTAT
TTCCGTTTGCCTATTGCTCATTTTCTTGTTAACTGCTGAGCAACTGACCACCAATTATCTTTACCCAACATTGTATTCAT
ATACGCTGATTGTCTATATTGCATTAAATGTCAGTCAGCTTTTATTTCTTAAATTATTTCCGGCCCACGTGAATAAACAG
CTGATTGCGATCTTTCTTGTCGATGTCATCTGTTTAAGTACCATTACCTTTGCAACAGGTGGGCCAAACTTACAGCTCAG
TTTGCTTTATGTCATTATTATTTTTGCCTCGGCAATTTTATTGAATGCTCAGCTTTCTCTAGTGGTAACGCTGCTCGCTG
TTATCATGATTGTGTATCAGCGTTTTCTGGGAAATTTATTTGACTACAACAATTTAAACCATCTCAGTAATAGCCTGCTG
TTGGTATTTTTATTCTTGGTGGTATATGCCATAGGGCGCATTGCAGTACAGCGTTTTAAAATTTTAGAAGCCCTTACTTT
TCATCAATCCATTGAAATTCATCAACTCCAAAACATTAACCGTTATATCTTGGAGCAAATTGAGGATGGATATCTGGTTT
TAGATGAAAGTAATCATATTGTTTTAACCAATCCTGCTGCCAATACATTATTAGGCATTCATTTACCTGTTTCCCATGAA
AAAACGCCCTTAATCAAATGGCAACCCGATCTATTTGAACTGATCAAATTCAGTGACCTAGAAGATGGTGAAGAGTTCAC
TTTTGAGTCACAACAAAGTTTGTATACCGTCCATGTACGTGTCAAACATTTGGTCGTACCTGAACAAGCATTAGTTTTAT
TAATTCTCAAAGATGCTCAGAAATTAACTCAGCGTGTACAACAACTTAAACTCGCAGCGCTCGGACAACTTTCTGCCAGT
ATTGCACATGAAATTCGCAATCCTTTAGCCGCGATTGTGCAAGCCAATGAGCTGTTTAATGAAAGCGATGCGCATCAACA
ACAAATGCTCACTCGTATGATTCGTAAACAAGCAAAACGTATCGATCGGATTGTAGAAGATACTTTGGCAATGGCACGCA
ATAAACCGACTGAACCACAAAATATTCATCTTGTGGAGTTCTTTGAAAGTTTATTTGAAGAGGATCTAGTCGATGTCAAA
CACATGATCCAATTAGAGCTTTCAGAGAATATTCAAATCTTATTTGATGACAAACAGTTGCGCCAAGTGCTGATCAATTT
GGTGAGAAATGCATTAAGACACAACGCATCGGATATACCTTATATCGAAATTAAAGTACACGCTGAAGAGACTAAAGTTC
GAATTGATGTTATCGATTTTGGTTTAGGGGTAGCAAAAAGAGACCTTTCTCAACTGTTTAAACCATTTTTTAGTACCGAA
ATCAAAGGAACTGGTTTAGGATTGTATTTGTCTCATAGTTTCTGTGAGGCGAATCATGCAAAGCTCACTTATGTAGAGCG
ACAACAAGGAGCATGCTTCAGGATTGAATGCTCAATAATTAATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

65.437

98.848

0.647

Multiple sequence alignment