Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CR539_RS20515 Genome accession   NZ_CP024147
Coordinates   3960850..3961326 (-) Length   158 a.a.
NCBI ID   WP_158302277.1    Uniprot ID   -
Organism   Escherichia coli strain 14EC033     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3955850..3966326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR539_RS20475 (CR539_20405) mug 3957193..3957699 (-) 507 WP_032281621.1 G/U mismatch-specific DNA glycosylase -
  CR539_RS20485 (CR539_20415) - 3957999..3958844 (-) 846 WP_101969520.1 DUF4942 domain-containing protein -
  CR539_RS20490 (CR539_20420) - 3958941..3959138 (-) 198 WP_000772024.1 DUF957 domain-containing protein -
  CR539_RS20495 (CR539_20425) - 3959158..3959646 (-) 489 Protein_3735 DUF5983 family protein -
  CR539_RS20500 (CR539_20430) cbtA 3959643..3960020 (-) 378 WP_054627366.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CR539_RS20505 (CR539_20435) cbeA 3960109..3960462 (-) 354 WP_199560497.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CR539_RS20510 (CR539_20440) yeeT 3960542..3960763 (-) 222 WP_053265969.1 DUF987 domain-containing protein -
  CR539_RS20515 (CR539_20445) radC 3960850..3961326 (-) 477 WP_158302277.1 RadC family protein Machinery gene
  CR539_RS20520 (CR539_20450) - 3961341..3961826 (-) 486 WP_000214317.1 antirestriction protein -
  CR539_RS20525 (CR539_20455) - 3961917..3962735 (-) 819 WP_001234702.1 DUF932 domain-containing protein -
  CR539_RS20535 (CR539_20465) - 3963063..3965909 (-) 2847 WP_101969522.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17656.25 Da        Isoelectric Point: 6.9859

>NTDB_id=211174 CR539_RS20515 WP_158302277.1 3960850..3961326(-) (radC) [Escherichia coli strain 14EC033]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=211174 CR539_RS20515 WP_158302277.1 3960850..3961326(-) (radC) [Escherichia coli strain 14EC033]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAGTGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGACATCCGGGTACCGGACCATCTGATAATCGGTGGCAGCCAGGTATTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386

Multiple sequence alignment