Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AHTJS_RS13230 Genome accession   NZ_CP018871
Coordinates   2695798..2696223 (-) Length   141 a.a.
NCBI ID   WP_005092347.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain TJS01     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2690798..2701223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHTJS_RS13200 (AHTJS_13185) - 2690886..2691155 (-) 270 WP_004637957.1 HPr family phosphocarrier protein -
  AHTJS_RS13205 (AHTJS_13190) rapZ 2691152..2692003 (-) 852 WP_004637956.1 RNase adapter RapZ -
  AHTJS_RS13210 (AHTJS_13195) panC 2692026..2692871 (-) 846 WP_075316148.1 pantoate--beta-alanine ligase -
  AHTJS_RS13215 (AHTJS_13200) panB 2692875..2693684 (-) 810 WP_026070453.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  AHTJS_RS13220 (AHTJS_13205) folK 2693724..2694212 (-) 489 WP_075316149.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  AHTJS_RS13225 (AHTJS_13210) pcnB 2694209..2695660 (-) 1452 WP_075316150.1 polynucleotide adenylyltransferase PcnB -
  AHTJS_RS13230 (AHTJS_13215) comEA 2695798..2696223 (-) 426 WP_005092347.1 ComEA family DNA-binding protein Machinery gene
  AHTJS_RS13235 (AHTJS_13220) mazG 2696192..2696998 (-) 807 WP_075316151.1 nucleoside triphosphate pyrophosphohydrolase -
  AHTJS_RS13240 (AHTJS_13225) - 2697095..2697871 (+) 777 WP_075316152.1 SDR family oxidoreductase -
  AHTJS_RS13245 (AHTJS_13230) - 2698224..2698652 (+) 429 WP_075316153.1 hypothetical protein -
  AHTJS_RS13250 (AHTJS_13235) - 2698779..2701085 (-) 2307 WP_004637947.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 16196.73 Da        Isoelectric Point: 10.6493

>NTDB_id=211174 AHTJS_RS13230 WP_005092347.1 2695798..2696223(-) (comEA) [Acinetobacter haemolyticus strain TJS01]
MKLPQLRSKTNFLLLIILWLGVIPQLNAKQFDQSYIQWKTQQQKHDQQLARQDDQYYLSRPTQQQNVKPVSSSVNISGDK
ISLNQANLQQLQSLSGVGEKKAQAIIEYRQKHGAFKALDELMNVKGIGPKLLEKNRSRLIL

Nucleotide


Download         Length: 426 bp        

>NTDB_id=211174 AHTJS_RS13230 WP_005092347.1 2695798..2696223(-) (comEA) [Acinetobacter haemolyticus strain TJS01]
ATGAAATTGCCGCAGTTACGCAGCAAAACTAACTTTTTATTATTGATTATTTTATGGTTGGGGGTAATTCCCCAGCTCAA
TGCTAAACAGTTTGATCAATCCTATATACAATGGAAAACACAGCAACAAAAACATGATCAGCAATTGGCTAGACAAGATG
ACCAATATTATTTATCTAGACCGACCCAGCAACAAAATGTGAAACCTGTTTCATCTTCTGTAAATATTTCAGGCGATAAA
ATTAGCTTAAATCAAGCGAACTTACAGCAGTTGCAAAGTTTAAGTGGTGTAGGTGAGAAAAAAGCCCAAGCGATTATTGA
ATATCGACAAAAACATGGTGCATTTAAAGCATTAGATGAACTCATGAATGTCAAAGGAATTGGGCCGAAACTGCTTGAAA
AGAATAGGTCGAGACTTATTTTATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(79-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

50.37

95.745

0.482
  comEA Acinetobacter baumannii D1279779

48.507

95.035

0.461
  comEA Acinetobacter baylyi ADP1

44.118

96.454

0.426

Multiple sequence alignment