Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CR539_RS18395 Genome accession   NZ_CP024147
Coordinates   3551492..3552007 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 14EC033     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3546492..3557007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR539_RS18375 (CR539_18310) emrA 3546642..3547814 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CR539_RS18380 (CR539_18315) emrB 3547831..3549369 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CR539_RS18385 (CR539_18320) - 3549627..3550334 (+) 708 WP_001095979.1 RNA ligase family protein -
  CR539_RS18390 (CR539_18325) - 3550331..3551443 (+) 1113 WP_032281481.1 ATP-binding protein -
  CR539_RS18395 (CR539_18330) luxS 3551492..3552007 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CR539_RS18400 (CR539_18335) gshA 3552157..3553713 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  CR539_RS18405 (CR539_18340) yqaA 3553786..3554214 (-) 429 WP_001287454.1 YqaA family protein -
  CR539_RS18410 (CR539_18345) yqaB 3554211..3554777 (-) 567 WP_032281482.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CR539_RS18440 (CR539_18375) csrA 3556141..3556326 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=211166 CR539_RS18395 WP_001130211.1 3551492..3552007(-) (luxS) [Escherichia coli strain 14EC033]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=211166 CR539_RS18395 WP_001130211.1 3551492..3552007(-) (luxS) [Escherichia coli strain 14EC033]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment