Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   AHTJS_RS01365 Genome accession   NZ_CP018871
Coordinates   288575..289285 (+) Length   236 a.a.
NCBI ID   WP_005088515.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain TJS01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 283575..294285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHTJS_RS01350 (AHTJS_01340) ponA 284121..286712 (-) 2592 WP_075314547.1 penicillin-binding protein PBP1a -
  AHTJS_RS01355 (AHTJS_01345) comM 286876..287934 (+) 1059 WP_004641327.1 pilus assembly protein PilM Machinery gene
  AHTJS_RS01360 (AHTJS_01350) pilN 287934..288578 (+) 645 WP_004641325.1 PilN domain-containing protein Machinery gene
  AHTJS_RS01365 (AHTJS_01355) pilO 288575..289285 (+) 711 WP_005088515.1 type 4a pilus biogenesis protein PilO Machinery gene
  AHTJS_RS01370 (AHTJS_01360) pilP 289285..289812 (+) 528 WP_005088514.1 pilus assembly protein PilP Machinery gene
  AHTJS_RS01375 (AHTJS_01365) pilQ 289874..292006 (+) 2133 WP_167365854.1 type IV pilus secretin PilQ family protein Machinery gene
  AHTJS_RS01380 (AHTJS_01370) aroK 292045..292587 (+) 543 WP_005087029.1 shikimate kinase AroK -
  AHTJS_RS01385 (AHTJS_01375) aroB 292608..293693 (+) 1086 WP_075314551.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26963.54 Da        Isoelectric Point: 4.8810

>NTDB_id=211154 AHTJS_RS01365 WP_005088515.1 288575..289285(+) (pilO) [Acinetobacter haemolyticus strain TJS01]
MSQDELNDLNQEGAAVKKKKMTVEQFFQQFNTLDMNNYGSWPWSVKVTCWIFILLAVAALGYFVVIQKQLQTIANAEARE
QSLLNEFREKESKLRNLQQYQTQLQEMEANFNQQLEQLPKETEIPSLVEDMNLTGVNSGLKFKNIRLEKEVRQEFFIEQP
ISLEATGDYHAFGAFATGIAALPRIVTLHDFIVEAKEDTQKKSDIPVVHYTVKAKTYRYVGADDQVDSTAVSGGQR

Nucleotide


Download         Length: 711 bp        

>NTDB_id=211154 AHTJS_RS01365 WP_005088515.1 288575..289285(+) (pilO) [Acinetobacter haemolyticus strain TJS01]
ATGAGTCAAGATGAACTAAATGATCTCAATCAAGAAGGCGCAGCTGTAAAGAAAAAGAAAATGACAGTTGAGCAATTTTT
TCAGCAATTTAATACTTTAGATATGAACAACTATGGCAGTTGGCCATGGTCGGTAAAAGTGACGTGTTGGATTTTTATTT
TACTCGCTGTTGCGGCATTGGGTTATTTCGTTGTGATCCAAAAGCAGCTACAGACGATAGCTAATGCTGAAGCGCGTGAA
CAAAGTCTATTAAATGAGTTTAGAGAAAAGGAATCTAAATTACGCAACTTGCAGCAATACCAAACTCAATTGCAAGAAAT
GGAAGCGAATTTTAATCAACAGCTTGAGCAGTTGCCAAAAGAAACTGAAATTCCGAGTTTGGTTGAGGATATGAACTTAA
CTGGGGTAAATTCGGGTCTGAAATTTAAAAATATTCGTTTAGAAAAAGAAGTTAGACAAGAGTTCTTCATTGAGCAACCA
ATTAGTCTGGAAGCAACAGGCGATTATCATGCCTTCGGTGCTTTTGCGACAGGTATTGCCGCTTTGCCTCGAATCGTAAC
TTTGCATGATTTTATCGTCGAAGCGAAAGAAGATACTCAGAAAAAATCTGATATCCCTGTTGTCCATTATACGGTTAAAG
CAAAAACTTATCGTTATGTTGGGGCGGATGATCAGGTTGATAGCACTGCTGTTTCAGGGGGGCAACGCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

73.913

97.458

0.72
  comO Acinetobacter baylyi ADP1

71.429

97.881

0.699

Multiple sequence alignment