Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AHTJS_RS01375 Genome accession   NZ_CP018871
Coordinates   289874..292006 (+) Length   710 a.a.
NCBI ID   WP_167365854.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain TJS01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 284874..297006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHTJS_RS01355 (AHTJS_01345) comM 286876..287934 (+) 1059 WP_004641327.1 pilus assembly protein PilM Machinery gene
  AHTJS_RS01360 (AHTJS_01350) pilN 287934..288578 (+) 645 WP_004641325.1 PilN domain-containing protein Machinery gene
  AHTJS_RS01365 (AHTJS_01355) pilO 288575..289285 (+) 711 WP_005088515.1 type 4a pilus biogenesis protein PilO Machinery gene
  AHTJS_RS01370 (AHTJS_01360) pilP 289285..289812 (+) 528 WP_005088514.1 pilus assembly protein PilP Machinery gene
  AHTJS_RS01375 (AHTJS_01365) pilQ 289874..292006 (+) 2133 WP_167365854.1 type IV pilus secretin PilQ family protein Machinery gene
  AHTJS_RS01380 (AHTJS_01370) aroK 292045..292587 (+) 543 WP_005087029.1 shikimate kinase AroK -
  AHTJS_RS01385 (AHTJS_01375) aroB 292608..293693 (+) 1086 WP_075314551.1 3-dehydroquinate synthase -
  AHTJS_RS01390 (AHTJS_01380) - 293709..294581 (+) 873 WP_075314553.1 hypothetical protein -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 77209.06 Da        Isoelectric Point: 7.2181

>NTDB_id=211156 AHTJS_RS01375 WP_167365854.1 289874..292006(+) (pilQ) [Acinetobacter haemolyticus strain TJS01]
MNRAFRQFSMGAVAIAVMQVASAQVNMTNIVPMSLADQGTEIRVMFNGLPPQPQAYQLEQPSRLILDFDKAKQTLKQSSI
PVATNEASSVEVAADDQRSRVIVNLKDAGAFTTRVEGNTFILKINSARPAIASPVSATARQVQQGVSNIGFQRGNQGEGL
VVIDLLGSNTPVDVQQQGSKIVVRTMGNKIPTHLARRLNTNDFATPVASIDAYNDKGNGVITIQSAGSYEYMAYQAENKL
TISLKRPEEKSPLKAKSQTYTGNKISLDFQDIEVRRVLQLLADFTNINMVAADTVQGNITLRLKDVPWDQALDIVLKTKN
LDKRRNGNVIWIAPVSELIKAEEEEAKAIAQSVKLAPIQSEYIKLSYAKAADILKLIEDSRDGKAGMSNRTANTDSLALE
SLLSPRGSAVADVRTNTLIVNDTAQNIDKIRKMVDLLDVSVKQVMIEARIVRASTDFTREMGVKWGILSQGVTRNNDLLV
GGSDTTLWNLREPKKDSDTGGWKYEIERPDNLNVDLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGFGEVISTPKVM
TADKQPAKIESGTKIPYASSTGGGANAVPKTEFIDATLSLDVTPSITPDGKVMMKLNIAKDAPGAPTPTGQLTISKNSID
TNVLVDNGETVVLGGIFEQENISSQIKVPFLGDLPYVGRLFRRDLKTDNKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=211156 AHTJS_RS01375 WP_167365854.1 289874..292006(+) (pilQ) [Acinetobacter haemolyticus strain TJS01]
ATGAATCGTGCATTCCGTCAATTTTCAATGGGTGCTGTCGCAATAGCAGTGATGCAGGTAGCATCAGCACAAGTGAACAT
GACCAACATTGTGCCAATGAGTTTGGCTGATCAGGGGACTGAAATTCGTGTCATGTTTAATGGTCTGCCACCACAGCCGC
AGGCATATCAACTTGAACAACCCTCTCGTTTGATTTTGGATTTTGATAAAGCTAAACAAACCTTAAAGCAGAGTTCTATA
CCTGTTGCAACCAATGAAGCCAGTTCAGTAGAAGTCGCTGCGGATGACCAGCGTTCTCGCGTGATAGTGAATTTGAAAGA
TGCAGGCGCTTTTACCACACGTGTAGAAGGTAATACTTTTATTCTAAAAATTAATTCTGCGCGTCCTGCTATTGCGAGTC
CTGTATCTGCGACTGCCCGTCAAGTACAACAAGGGGTTTCAAATATTGGTTTCCAACGTGGCAATCAAGGTGAAGGTCTA
GTTGTGATTGATTTATTGGGTAGTAATACGCCAGTAGATGTACAACAGCAAGGGAGTAAAATCGTTGTGCGGACGATGGG
GAACAAAATTCCGACCCATTTAGCACGTCGTTTAAATACCAATGATTTCGCAACTCCTGTAGCAAGTATTGATGCCTATA
ATGATAAAGGTAATGGTGTGATTACTATTCAGTCTGCGGGTAGTTATGAATACATGGCTTATCAAGCTGAAAATAAACTG
ACGATTAGTTTAAAGCGACCTGAAGAAAAATCACCATTAAAAGCAAAATCTCAAACTTATACTGGCAATAAGATTTCTTT
AGATTTCCAAGATATTGAAGTGCGTCGTGTGCTGCAGTTACTTGCTGATTTTACCAATATCAATATGGTGGCTGCTGATA
CGGTACAAGGGAATATTACTTTACGCCTAAAAGATGTACCTTGGGATCAGGCTTTGGATATTGTCTTAAAGACCAAAAAT
CTAGATAAGCGTCGTAATGGTAATGTGATATGGATCGCGCCAGTTTCAGAGTTGATTAAGGCTGAGGAAGAAGAGGCGAA
AGCCATTGCTCAAAGTGTAAAGCTTGCACCAATTCAATCTGAATATATCAAGCTGAGCTATGCAAAAGCAGCAGATATTT
TAAAACTGATCGAAGATTCTCGTGATGGTAAAGCTGGTATGTCCAATCGGACAGCAAACACAGATTCACTTGCTTTAGAA
AGCTTATTGAGTCCGCGAGGTAGTGCTGTCGCAGATGTGCGTACTAATACTTTGATCGTAAATGATACGGCCCAAAATAT
TGACAAGATCCGTAAGATGGTGGATCTGTTAGATGTTTCAGTTAAACAGGTGATGATCGAAGCCCGTATTGTTCGGGCGA
GCACAGACTTTACTCGGGAGATGGGGGTCAAGTGGGGAATCTTATCTCAAGGTGTCACCCGAAATAATGATTTATTAGTC
GGTGGAAGTGACACTACGCTGTGGAATTTGAGAGAGCCGAAAAAGGATAGTGATACTGGTGGTTGGAAATATGAAATCGA
ACGTCCTGATAATTTAAATGTAGATTTGGGTGCAGTTACTCCGGGTGCAAGTCGTATTGCTTTTGGCTTAATTAGCCTCT
CTGATTTTATGTTGGATTTAGAACTTTCTGCAGTACAGGCGGATGGTTTTGGTGAGGTTATTTCAACGCCTAAAGTGATG
ACTGCTGATAAGCAGCCTGCAAAGATCGAGTCAGGAACCAAAATTCCTTATGCATCTTCGACGGGTGGGGGCGCAAATGC
GGTACCTAAAACGGAGTTCATTGATGCAACTTTAAGCTTAGATGTGACTCCAAGCATTACGCCCGATGGAAAAGTCATGA
TGAAACTTAACATTGCAAAAGATGCACCTGGCGCACCAACGCCAACGGGTCAATTAACCATTAGTAAGAATTCAATTGAT
ACCAATGTTTTGGTTGATAATGGTGAAACTGTAGTGCTTGGTGGTATTTTTGAGCAGGAAAATATCAGCTCACAAATTAA
AGTGCCATTTTTAGGTGATCTTCCGTATGTGGGGCGACTTTTCCGTCGTGATCTGAAAACAGACAATAAACGTGAACTGC
TTATTTTTGTGACACCGAGAATTGTTAATGACACTTTGACCAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(292-334)

Bacterial type II/III secretion system short domain (Secretin_N)

(362-443)

AMIN domain (AMIN)

(37-121)

Bacterial type II and III secretion system protein (Secretin)

(544-702)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.724

100

0.762
  pilQ Acinetobacter baumannii strain A118

74.586

100

0.761
  comQ Acinetobacter baylyi ADP1

71.13

100

0.718
  pilQ Pseudomonas aeruginosa PAK

39.402

100

0.408
  pilQ Legionella pneumophila strain ERS1305867

38.872

94.93

0.369
  pilQ Legionella pneumophila strain Lp02

38.724

94.93

0.368

Multiple sequence alignment