Detailed information NTG0211012

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: BI315_RS07335
• Genome accession: NZ_CP018850
• Coordinates: 1650228..1651622 (+)
• Length: 464 a.a.
• NCBI ID: WP_015463522.1
• Uniprot ID: A0A7S6YVA4
• Organism: Xanthomonas citri pv. citri strain LJ207-7
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1628801..1656318	1650228..1651622	within	0

Gene organization within MGE regions

Location: 1628801..1656318

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BI315_RS07250 (BI315_07240)	-	1628801..1629968 (+)	1168	Protein_1350	IS3 family transposase	-
BI315_RS07260 (BI315_07250)	avrXacE2	1630728..1631798 (-)	1071	WP_011052114.1	type III secretion system effector avirulence protein AvrXacE2	-
BI315_RS07265 (BI315_07255)	-	1631884..1633161 (-)	1278	WP_011052115.1	lytic murein transglycosylase	-
BI315_RS07270 (BI315_07260)	-	1633294..1636284 (-)	2991	WP_075155145.1	Tn3-like element TnXax1 family transposase	-
BI315_RS07275 (BI315_07265)	-	1636292..1637566 (-)	1275	WP_011052968.1	tyrosine-type recombinase/integrase	-
BI315_RS07280 (BI315_07270)	-	1637759..1638828 (+)	1070	Protein_1355	DNA-binding protein	-
BI315_RS07285 (BI315_07275)	xopE	1638962..1640038 (+)	1077	WP_075155146.1	XopE/AvrPphe family type III secretion system effector	-
BI315_RS07290 (BI315_07280)	-	1640369..1641450 (+)	1082	Protein_1357	DNA-binding protein	-
BI315_RS07295 (BI315_07285)	xopAI	1641584..1642474 (+)	891	WP_011052119.1	type III secretion system effector XopAI	-
BI315_RS07305 (BI315_07295)	-	1643805..1644089 (+)	285	WP_016849322.1	hypothetical protein	-
BI315_RS07310 (BI315_07300)	-	1644317..1645432 (+)	1116	WP_011052122.1	IS1595 family transposase	-
BI315_RS07315 (BI315_07305)	-	1645387..1645902 (-)	516	WP_011052123.1	hypothetical protein	-
BI315_RS07320 (BI315_07310)	sucD	1645989..1646864 (-)	876	WP_005921370.1	succinate--CoA ligase subunit alpha	-
BI315_RS07325 (BI315_07315)	sucC	1646889..1648058 (-)	1170	WP_005915812.1	ADP-forming succinate--CoA ligase subunit beta	-
BI315_RS07330 (BI315_07320)	-	1648290..1649903 (+)	1614	WP_003488599.1	HAMP domain-containing sensor histidine kinase	-
BI315_RS07335 (BI315_07325)	pilR	1650228..1651622 (+)	1395	WP_015463522.1	sigma-54 dependent transcriptional regulator	Regulator
BI315_RS07340 (BI315_07330)	-	1651845..1652012 (-)	168	WP_015463523.1	hypothetical protein	-
BI315_RS07345 (BI315_07335)	pilB	1652144..1652263 (-)	120	WP_005915819.1	hypothetical protein	Machinery gene
BI315_RS07355 (BI315_07345)	pilB	1652757..1654493 (-)	1737	WP_011052125.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BI315_RS07360 (BI315_07350)	-	1654557..1655012 (-)	456	WP_015463526.1	pilin	-
BI315_RS07365 (BI315_07355)	-	1655122..1655562 (-)	441	WP_011052127.1	pilin	-

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50105.56 Da
• Isoelectric Point: 6.6973

>NTDB_id=211012 BI315_RS07335 WP_015463522.1 1650228..1651622(+) (pilR) [Xanthomonas citri pv. citri strain LJ207-7]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMEILRATISKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELGNILERALALAEDDQISATDLRLPAHGGHRLAAPPGGAA
AEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1395 bp

>NTDB_id=211012 BI315_RS07335 WP_015463522.1 1650228..1651622(+) (pilR) [Xanthomonas citri pv. citri strain LJ207-7]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACTGCTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGTTTGCCGGACGGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
CGACATCGGCGTACTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGTGCCATGGAAATCCTGCGCGCCACCATCAGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGC
ACGTGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGACCGGTCGGCGC
ATCCAGCGAATCGCTGGTGGATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGGCATGACCTGTACTACCGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGA
CGCCTTGAATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGGAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCTACCGACCTGCGCCTGCCCGCGCACGGGGGCCACCGGTTGGCCGCCCCCCCAGGAGGCGCCGCG
GCCGAACCGCGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCGCTGCCTTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGC
TGCGTTACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

• Response regulator receiver domain (Response_reg) (8-114)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

3D structure

• AlphaFold DB: A0A7S6YVA4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.851	99.784	0.627
pilR	Acinetobacter baumannii strain A118	49.138	100	0.491